View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_22 (Length: 380)
Name: NF15554_high_22
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 48888307 - 48887956
Alignment:
| Q |
13 |
tatataattctggccaaaagaaaaaagacgaaatttttatcaatgtcaacataataaaacagtaacattcaaacacaacctggagttcacctgtttactg |
112 |
Q |
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| T |
48888307 |
tatacaattctggccaaaagaaaaaagacgaaatttttatcaatgtcaacataataaaacagtaacattcaaacacaacctggagttcacctgtttactg |
48888208 |
T |
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| Q |
113 |
tcaggactccaactaactgcatatatgctgcccttgtgaccgtcctcttcagaaaactctccaagtttactcccagtctttccatcatatataataccct |
212 |
Q |
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| T |
48888207 |
tcacgactccaactaactgcatatatgctgcccttgtgaccgtcctcttcagaaaactctccaagtttactcccagtctttccatcatatataataccct |
48888108 |
T |
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| Q |
213 |
tcctatctgagctaactgtaacgaatttgctcccatctggagaatatctaacacagttgacaaaattcgtatggtccctgcagatatagaatgtcttcta |
312 |
Q |
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| T |
48888107 |
tcctatctgagctaactgtaacgaatttgctcccatctggagaatatctaacacagttgacaaaattcgtatggtccctgcagatatagaatgtcttcta |
48888008 |
T |
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| Q |
313 |
tgacaacctgaataaggaaatagaaacctactcaacccaaaatacttatttc |
364 |
Q |
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| T |
48888007 |
tgacaacctgaataaggaaatagaaacctactcaacccaaaatacttatttc |
48887956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 45097868 - 45097962
Alignment:
| Q |
185 |
ccagtctttccatcatatataatacccttcctatctgagctaactgtaacgaatttgctcccatctggagaatatctaacacagttgacaaaatt |
279 |
Q |
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| T |
45097868 |
ccagtctttccatcgaatatgataccctttttgtcagaactaacagttacaaatttactgccatctggagaatatcttacacaattgacaaaatt |
45097962 |
T |
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