View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_24 (Length: 339)
Name: NF15554_high_24
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 32769722 - 32770031
Alignment:
| Q |
18 |
gaatgttccaaattgttaaccatgaaatacctacagaacttataaccaaacttcaaagtgttggaaaaacgttttttgagttacctcaagaagaaaagga |
117 |
Q |
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| T |
32769722 |
gaatgttccaaattgttaatcatgaaatacctacagaacttataaccaaacttcaaagtgttggaaaaacgttttttgagttacctcaagaagaaaagga |
32769821 |
T |
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| Q |
118 |
gcaatatgctaaacctcctgattctaaatctattgaaggttatggatctaagcttggtaatgatattgataacaagagaggttgggttgatcatttgttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32769822 |
gcaatatgctaaacctcctgattctaaatctattgaaggttatggatctaagcttggtaatgatattgataacaagagaggttgggttgatcatttgttt |
32769921 |
T |
|
| Q |
218 |
cataagatatggccaccttcggatattaactatcgattttggcctaaaaatcctccttcttacaggttagttatttatgtatgcgtcttattacaagctt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
32769922 |
cataagatatggccaccttcggatattaactatcgattttggcctaaaaatcctccttcttacaggttacttatttatgcatgcctcttattacaagctt |
32770021 |
T |
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| Q |
318 |
ctataattct |
327 |
Q |
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|||||||||| |
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| T |
32770022 |
ctataattct |
32770031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 284
Target Start/End: Original strand, 24398879 - 24398972
Alignment:
| Q |
191 |
aagagaggttgggttgatcatttgtttcataagatatggccaccttcggatattaactatcgattttggcctaaaaatcctccttcttacaggt |
284 |
Q |
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| T |
24398879 |
aagaaaggttgggtagatcatttgtttcatattatatggccaccttcttccattaattaccgtttttggcctaacaaccctgcttcgtacaggt |
24398972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 24404506 - 24404621
Alignment:
| Q |
18 |
gaatgttccaaattgttaaccatgaaatacctacagaacttataaccaaacttcaaagtgttggaaaaacgttttttgagttacctcaagaagaaaagga |
117 |
Q |
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||||||| |||||||| ||||||||||| || | ||| |||||| || | ||||||||||| ||| ||||||||||||||| ||||| ||||| || |
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| T |
24404506 |
gaatgtttcaaattgtgaaccatgaaattccaaatgaagttataagaaagttgcaaagtgttggtaaagagttttttgagttaccacaagatgaaaaaga |
24404605 |
T |
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| Q |
118 |
gcaatatgctaaacct |
133 |
Q |
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| T |
24404606 |
ggtttatgctaaacct |
24404621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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