View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15554_high_27 (Length: 323)

Name: NF15554_high_27
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15554_high_27
NF15554_high_27
[»] chr8 (4 HSPs)
chr8 (19-141)||(33510517-33510637)
chr8 (235-316)||(35822488-35822570)
chr8 (235-284)||(23965418-23965467)
chr8 (178-316)||(33510018-33510161)
[»] chr4 (3 HSPs)
chr4 (235-316)||(38573016-38573098)
chr4 (235-316)||(37402039-37402121)
chr4 (235-316)||(53001842-53001929)
[»] chr5 (1 HSPs)
chr5 (235-316)||(13799069-13799151)
[»] chr3 (1 HSPs)
chr3 (235-316)||(40698287-40698369)
[»] chr1 (2 HSPs)
chr1 (235-316)||(1259153-1259235)
chr1 (235-316)||(8291996-8292078)
[»] chr2 (2 HSPs)
chr2 (235-316)||(18096317-18096399)
chr2 (235-317)||(37664669-37664751)
[»] chr7 (1 HSPs)
chr7 (237-311)||(15667352-15667427)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 33510637 - 33510517
Alignment:
Q  19 aaaataacattgcgcgtgtttgtttttgctctctctttaggcttatatatttgaccagttttacaattctctgatatttactctcaaattttaaccccct 118  Q
    ||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33510637 aaaataacattgcgcgtgtttgtttttgctctct--tcaggctcatatatttgaccagttttacaattctctgatatttactctcaaattttaaccccct 33510540  T
Q  119 aaattagccgtctgacgctatat 141  Q
    |||||||||||||||| ||||||    
T  33510539 aaattagccgtctgacactatat 33510517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 35822488 - 35822570
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca 316  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||||||||||| || ||||||||||||||||||| ||||    
T  35822488 aggaaattaaaagacaagaaaaccaaactagccaattcgctgcctaaataccccagaggtatccgcaagcatgatgatatcca 35822570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 23965418 - 23965467
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaata 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23965418 aggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaata 23965467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 316
Target Start/End: Complemental strand, 33510161 - 33510018
Alignment:
Q  178 acttctactccctccatctattaataggtgatccttttgtaannnnnnnnn----atgactaggaaattaaaagacaagaaaaccaaactcgtcaatccg 273  Q
    |||||||||||||||||| ||||||||||||| |||||||||             ||||| |||||||||||||||||||||| |||||| | |||||||    
T  33510161 acttctactccctccatccattaataggtgatacttttgtaattttattttttttatgacgaggaaattaaaagacaagaaaatcaaactggccaatccg 33510062  T
Q  274 ctgcctaaatacccca-agatatccgcaagcatgatgatgtcca 316  Q
     |||||||| | |||| || |||||||||||||| |||| ||||    
T  33510061 ttgcctaaacatcccagaggtatccgcaagcatggtgatatcca 33510018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 38573016 - 38573098
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca 316  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  38573016 aggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaataccccagaggtatccgcaagcatgatgatatcca 38573098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 37402121 - 37402039
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca 316  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  37402121 aggaaattaaaagacaagaaaaccaaactagccaatccgctgcctaaataccccagaggtatccgcaagcatgatgatatcca 37402039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 53001929 - 53001842
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca------agatatccgcaagcatgatgatgtcca 316  Q
    |||||||||||||||||||||||||||||   ||||| |||||||||||||||||      || ||||||||||||||||||| ||||    
T  53001929 aggaaattaaaagacaagaaaaccaaactatccaatctgctgcctaaataccccagtccagaggtatccgcaagcatgatgatatcca 53001842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 13799151 - 13799069
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca 316  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||| | || ||||||||||||||||||| ||||    
T  13799151 aggaaattaaaagacaagaaaaccaaactagccaatccgctgcctaaatacccaagaggtatccgcaagcatgatgatatcca 13799069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 40698287 - 40698369
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca 316  Q
    |||||||||||||||||||||| ||||||   ||||||||||||||||||||||| || ||| ||||||||||||||| ||||    
T  40698287 aggaaattaaaagacaagaaaatcaaactacccaatccgctgcctaaataccccagaggtattcgcaagcatgatgatatcca 40698369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 1259153 - 1259235
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca 316  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||| ||||||||||| || ||||||||||||||||||| ||||    
T  1259153 aggaaattaaaagacaagaaaactaaactagccaatctgctgcataaataccccagaggtatccgcaagcatgatgatatcca 1259235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 8291996 - 8292078
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca 316  Q
    |||||||||||||||| ||||| |||||| | |||||||||||| |||||||| | || ||||| |||||| |||||| ||||    
T  8291996 aggaaattaaaagacaggaaaaacaaactagccaatccgctgccaaaataccctagaggtatcctcaagcaggatgatatcca 8292078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 18096399 - 18096317
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtcca 316  Q
    |||||||||||||||||||||| |||||| | |||| ||||||| |||||| ||| || ||||||||||||||||||| ||||    
T  18096399 aggaaattaaaagacaagaaaatcaaactagccaattcgctgcccaaatactccagaggtatccgcaagcatgatgatatcca 18096317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 37664669 - 37664751
Alignment:
Q  235 aggaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgatgtccat 317  Q
    |||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||| || |||||| ||| | |||||| |||||    
T  37664669 aggaaattaaaaga-aagaaaaacaaactagtcaatctgctgcctaaataccccagaggtatccgtaagtaagatgatatccat 37664751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 15667352 - 15667427
Alignment:
Q  237 gaaattaaaagacaagaaaaccaaactcgtcaatccgctgcctaaatacccca-agatatccgcaagcatgatgat 311  Q
    ||||||||||||||| |||| |||||| |||||| ||||||||||||||  || || |||||||||||| ||||||    
T  15667352 gaaattaaaagacaaaaaaaacaaactagtcaattcgctgcctaaatacatcagaggtatccgcaagcaggatgat 15667427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University