View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_29 (Length: 315)
Name: NF15554_high_29
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 27 - 305
Target Start/End: Complemental strand, 28667707 - 28667429
Alignment:
| Q |
27 |
catcgataatgagaggtgcgcctaatgctccagcatcttccatgagtgttccgtttaaccatttctcatgtggtaagtccagaagttgaatccaaaccta |
126 |
Q |
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| T |
28667707 |
catcgataatgagaggtgcgcctaatgctccagcatcttccatgagtgctccgtttaaccattactcctgtggtaagtccagaagttgaatccaaacctg |
28667608 |
T |
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| Q |
127 |
cgcatgtgtgagacactgaaagtacttgttgaaatccttggctcatctagaaagcctcaacagtcccaacttcaaatttacaatccccatagcaagagat |
226 |
Q |
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| T |
28667607 |
cgcatgtgtgagacgctgagagtacttgttgaaatccttggcccatctagaaagcctcaacagtctcaacttcaaatttacaatccccatagcaagagat |
28667508 |
T |
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| Q |
227 |
gcacgcacatcttcatctgtggaggaagaaaattcataaaatccacgcccaagagaaatcagtttccatgctccctttg |
305 |
Q |
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| T |
28667507 |
gcacacacatcttcatctgtggaggaagaaaattcataaaatccacacccaagagaaatcagttgccatggtccctttg |
28667429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 17111240 - 17111128
Alignment:
| Q |
92 |
tcatgtggtaagtccagaagttgaatccaaacctacgcatgtgtgagacactgaaagtacttgttgaaatccttggctcatctagaaagcctcaacagtc |
191 |
Q |
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|||||||| ||||||||||| | |||||||||| ||||||||||||| |||| |||| ||||| |||||||||| |||| ||||||| |||||| | |
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| T |
17111240 |
tcatgtggcaagtccagaagccggatccaaacctgtgcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacaggc |
17111141 |
T |
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| Q |
192 |
ccaacttcaaatt |
204 |
Q |
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| T |
17111140 |
ccgactgcaaatt |
17111128 |
T |
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