View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15554_high_3 (Length: 679)

Name: NF15554_high_3
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15554_high_3
NF15554_high_3
[»] chr2 (8 HSPs)
chr2 (422-674)||(10658698-10658950)
chr2 (422-674)||(13309177-13309429)
chr2 (263-395)||(13309452-13309584)
chr2 (262-395)||(10658977-10659110)
chr2 (177-258)||(10659150-10659231)
chr2 (176-271)||(13309610-13309706)
chr2 (102-177)||(4473188-4473264)
chr2 (262-333)||(23940654-23940725)
[»] chr1 (6 HSPs)
chr1 (422-663)||(9898859-9899097)
chr1 (290-395)||(9898727-9898832)
chr1 (177-257)||(9898645-9898725)
chr1 (262-386)||(12547980-12548104)
chr1 (176-226)||(12547858-12547908)
chr1 (262-308)||(12550903-12550949)
[»] chr8 (1 HSPs)
chr8 (1-177)||(38587484-38587676)
[»] chr7 (1 HSPs)
chr7 (262-327)||(36975626-36975691)
[»] chr5 (1 HSPs)
chr5 (262-385)||(26007769-26007892)
[»] chr3 (1 HSPs)
chr3 (272-385)||(4956529-4956642)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 422 - 674
Target Start/End: Complemental strand, 10658950 - 10658698
Alignment:
Q  422 gaatggttttggttgttattactgaaccggtatcacaatctcatctcatctcatgggttccaaacccagctgcgcctccgaatctccaatctttcgacct 521  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10658950 gaatggttttggttgttattactgaacccgtatcacaatctcatctcatctcatgggttccaaacccagctgcgcctccgaatctccaatctttcgacct 10658851  T
Q  522 tcactgatctaagcttccttttacgctttgtttcctattctttgttttccgcaagcgagatccagatctagtttcgttttttcttctatgttttacgctt 621  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  10658850 tcactgatctaagcttccttttacgctttgtttcctcttctttgttttccgcaagcgagatccagatccagattcgttttttcttctatgttttacgctt 10658751  T
Q  622 tatactccttggttatgctgcagatctagttttgtttcttctcctatgcttct 674  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||    
T  10658750 tatactcctgggttatgctgcagatccagttttgtttcttcttctatgtttct 10658698  T

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Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 422 - 674
Target Start/End: Complemental strand, 13309429 - 13309177
Alignment:
Q  422 gaatggttttggttgttattactgaaccggtatcacaatctcatctcatctcatgggttccaaacccagctgcgcctccgaatctccaatctttcgacct 521  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13309429 gaatggttttggttgttattactgaacccgtatcacaatctcatctcatctcatgggttccaaacccaactgcgcctccgaatctccaatctttcgacct 13309330  T
Q  522 tcactgatctaagcttccttttacgctttgtttcctattctttgttttccgcaagcgagatccagatctagtttcgttttttcttctatgttttacgctt 621  Q
    ||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||| |||||||||||    
T  13309329 tcactgatctaagtttcattttacgctttgtttcctcttctttgttttccgcaagcgagatccagatccagatttgttttttcttctaggttttacgctt 13309230  T
Q  622 tatactccttggttatgctgcagatctagttttgtttcttctcctatgcttct 674  Q
    ||||||||| |||||||||||||||| | ||||||||||||| ||||| ||||    
T  13309229 tatactcctgggttatgctgcagatccaattttgtttcttcttctatgtttct 13309177  T

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Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 263 - 395
Target Start/End: Complemental strand, 13309584 - 13309452
Alignment:
Q  263 gggcggggatcggggaagtatcccccaccccgcggattccccgacccccgtgaaaatactgtaatgtccttgagtttttaaaaagctttaatatttttca 362  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13309584 gggcggggatcggggaagtatcccccgccccgtggattccccgacccccgtgaaaatactgtaatgtccttgtgtttttaaaaagctttaatatttttca 13309485  T
Q  363 gtgggtttttggacttttcatatatggtttaat 395  Q
    |||||||||||||||||||||||||||||||||    
T  13309484 gtgggtttttggacttttcatatatggtttaat 13309452  T

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Target: chr2; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 262 - 395
Target Start/End: Complemental strand, 10659110 - 10658977
Alignment:
Q  262 ggggcggggatcggggaagtatcccccaccccgcggattccccgacccccgtgaaaatactgtaatgtccttgagtttttaaaaagctttaatatttttc 361  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  10659110 ggggcggggatcggggaagtatcccccaccccgtggattccccgacccccgtgaaaatactgtaatgttcttgtgtttttaaaaagctttaatgtttttc 10659011  T
Q  362 agtgggtttttggacttttcatatatggtttaat 395  Q
     |||||||||||||||||||||||||||||||||    
T  10659010 ggtgggtttttggacttttcatatatggtttaat 10658977  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 10659231 - 10659150
Alignment:
Q  177 tagggatgttagtggagatttttcagagcggatccccgcggggattccccattcggtgccccattttcggggaattttcccc 258  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10659231 tagggatgtcagtggggatttttcagagcggatccccgcggggattccccattcggtgccccattttcgaggaattttcccc 10659150  T

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Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 13309706 - 13309610
Alignment:
Q  176 ctagggatgttagtggagatttttcagagcggatccccgcggggattccccattcggtgccccattttcggggaatttt-ccccgcaggggcgggga 271  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||||||    
T  13309706 ctagggatgtcagtggggatttttcagagcggatccccgcggggattccccattcggtgccccatttttgaggaattttcccccgcgggggcgggga 13309610  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 4473188 - 4473264
Alignment:
Q  102 ccatgagaacttgtttttatatcctatcctgttcgagtg-aatgacatgaatgccatgttggagaacggttttccct 177  Q
    |||||||||||||||||||| | ||||||  || ||||| ||||||||||||||||||||||||||||||| |||||    
T  4473188 ccatgagaacttgtttttatgttctatcccattggagtggaatgacatgaatgccatgttggagaacggttctccct 4473264  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 23940654 - 23940725
Alignment:
Q  262 ggggcggggatcggggaagtatcccccaccccgcggattccccgacccccgtgaaaatactgtaatgtcctt 333  Q
    ||||||||||||||||||||||||||  ||| ||||||||||| |  || |||||||||||||||| |||||    
T  23940654 ggggcggggatcggggaagtatcccctgccctgcggattccccaataccagtgaaaatactgtaatatcctt 23940725  T

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Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 422 - 663
Target Start/End: Original strand, 9898859 - 9899097
Alignment:
Q  422 gaatggttttggttgttattactgaaccggtatcacaatctcatctcatctcatgggttccaaacccagctgcgcctccgaatctccaatctttcgacct 521  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||| | |||||||||||||||||||||||||||||    
T  9898859 gaatggttttggttgttattactgaacccgtatcacagtctcatctcaactcatgggtttcaaacccaaccgcgcctccgaatctccaatctttcgacct 9898958  T
Q  522 tcactgatctaagcttccttttacgctttgtttcctattctttgttttccgcaagcgagatccagatctagtttcgttttttcttctatgttttacgctt 621  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  9898959 tcactgatctaagcttccttttacgctttgtttcctcttctttgttttccgcaagcgagatccagaaccagtttcgttttttcttctatgttttacgctt 9899058  T
Q  622 tatactccttggttatgctgcagatctagttttgtttcttct 663  Q
    ||||||||| |||||||||   |||| |||||||||||||||    
T  9899059 tatactcctaggttatgct---gatccagttttgtttcttct 9899097  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 9898727 - 9898832
Alignment:
Q  290 ccccgcggattccccgacccccgtgaaaatactgtaatgtccttgagtttttaaaaagctttaatatttttcagtgggtttttggacttttcatatatgg 389  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9898727 ccccgtggattccccaacccctgtgaaaatactgtaatgtccttgtgtttttaaaaagctttaatatttttcagtgggtttttggacttttcatatatgg 9898826  T
Q  390 tttaat 395  Q
    ||||||    
T  9898827 tttaat 9898832  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 9898645 - 9898725
Alignment:
Q  177 tagggatgttagtggagatttttcagagcggatccccgcggggattccccattcggtgccccattttcggggaattttccc 257  Q
    ||||||||| ||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||  ||||||||||||    
T  9898645 tagggatgtcagtggggatttttcagaacggatccccacgtggattccccattcggtgccccatttttagggaattttccc 9898725  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 12547980 - 12548104
Alignment:
Q  262 ggggcggggatcggggaagtatcccccaccccgcggattccccgacccccgtgaaaatactgtaatgtccttgagtttttaaaaagctttaatatttttc 361  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||  | ||||||| |||||  |||||  |||||||||||   || ||||||      
T  12547980 ggggcggggatcagggaagtatccctcgccccgcggattccccgaccccgttaaaaatacagtaatacccttgcatttttaaaaagtcctattattttct 12548079  T
Q  362 agtgggtttttggacttttcatata 386  Q
    | ||| ||||||||||||| |||||    
T  12548080 attggttttttggacttttaatata 12548104  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 12547858 - 12547908
Alignment:
Q  176 ctagggatgttagtggagatttttcagagcggatccccgcggggattcccc 226  Q
    |||||| ||| | ||| ||||||||||||||||||||||||||||||||||    
T  12547858 ctaggggtgtcaatggggatttttcagagcggatccccgcggggattcccc 12547908  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 12550949 - 12550903
Alignment:
Q  262 ggggcggggatcggggaagtatcccccaccccgcggattccccgacc 308  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||||    
T  12550949 ggggcggggatcagggaagtatcccccgccctgcggattccccgacc 12550903  T

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Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 38587484 - 38587676
Alignment:
Q  1 gttttagtatttttatgttaaatctaggcctatttttgtcaagttacttggttttcaatcaattcaaaattacttgtgttgagaacttacttagagcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38587484 gttttagtatttttatgttaaatctaggcctatttttgtcaagttacttggttttcaatcaattcaaaattacttgtgttgagaacttacttagagcaac 38587583  T
Q  101 tcc----------------atgagaacttgtttttatatcctatcctgttcgagtgaatgacatgaatgccatgttggagaacggttttccct 177  Q
    |||                |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  38587584 tccaatgttgttctatgttatgagaacttgtttttatgttctatcctgttcaagtgaatgacatgaatgccatgttggagaacggttctccct 38587676  T

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Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 36975691 - 36975626
Alignment:
Q  262 ggggcggggatcggggaagtatcccccaccccgcggattccccgacccccgtgaaaatactgtaat 327  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||  || ||||||||||||||||    
T  36975691 ggggcggggatcggggacgtatcccccgccccgcggattccccgataccagtgaaaatactgtaat 36975626  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 262 - 385
Target Start/End: Original strand, 26007769 - 26007892
Alignment:
Q  262 ggggcggggatcggggaagtatcccccaccccgcggattccccgacccccgtgaaaatactgtaatgtccttgagtttttaaaaagctttaatatttttc 361  Q
    ||||| ||||||||||||||||||| ||  || | ||||||||||||||||||| |||| | ||||  ||||| |||||||| |||  ||||||||||      
T  26007769 ggggcagggatcggggaagtatccctcattccacagattccccgacccccgtgataataatataatacccttgcgtttttaagaagtcttaatattttct 26007868  T
Q  362 agtgggtttttggacttttcatat 385  Q
    | ||| |||||||||| |||||||    
T  26007869 attggttttttggactattcatat 26007892  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 385
Target Start/End: Complemental strand, 4956642 - 4956529
Alignment:
Q  272 tcggggaagtatcccccaccccgcggattccccgacccccgtgaaaatactgtaatgtccttgagtttttaaaaagctttaatatttttcagtgggtttt 371  Q
    ||||||||||||||||| ||| |||||| ||||||||||    |||||| ||||||  ||||  ||||| ||||||  |||||| ||| || ||| ||||    
T  4956642 tcggggaagtatcccccgccctgcggatcccccgaccccatgaaaaatattgtaatacccttatgttttaaaaaagacttaatactttccactggttttt 4956543  T
Q  372 tggacttttcatat 385  Q
    |  |||||||||||    
T  4956542 taaacttttcatat 4956529  T

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