View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_33 (Length: 295)
Name: NF15554_high_33
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_33 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 7698478 - 7698754
Alignment:
| Q |
1 |
tttctataaaaaggaacccttcagtcatgcattaaacattcattttatccattaaactcataatggcttcttttgcaactcttttctccctcctcacaat |
100 |
Q |
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| T |
7698478 |
tttctataaaaaggaacccttcagtcatgcattaaacattcattttatccattaaactcataatggcttcttttgcaactcttttctccctcctcacaat |
7698577 |
T |
|
| Q |
101 |
agccattctctcattttcttgttcatcacaattcatcttacccattgaaaaagacccattaaccaatcttttctacacctcagttggcattggaacacct |
200 |
Q |
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| T |
7698578 |
agccattctctcattttcttgttcatcacaattcatcttacccattgaaaaagacccattaaccaatcttttctacacctcagttggcattggaacacct |
7698677 |
T |
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| Q |
201 |
caacacaatttcaatctagtgattgatattggaggaccaattatatggtatgactgcaacaaaaactataactcttc |
277 |
Q |
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| T |
7698678 |
caacacaatttcaatctagtgattgatattggaggaccaactatatggtatgactgcaacaaaaactataactcttc |
7698754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 277
Target Start/End: Original strand, 7710587 - 7710777
Alignment:
| Q |
93 |
ctcacaatagccattctctcattttcttgttcatcacaa---ttcatcttacccattgaaaaagacccattaaccaatcttttctacacctcagttggca |
189 |
Q |
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| T |
7710587 |
ctcacaatagcccttctctcattttcttgctcatcacaacagttcttctcaccagttgaaaaagacccaataaccaatctattctccactttactttggg |
7710686 |
T |
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| Q |
190 |
ttggaaca---cctcaacacaatttcaatctagtgattgatattggaggaccaattatatggtatgactgcaacaaaaactataactcttc |
277 |
Q |
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| T |
7710687 |
taggaacagaacctacacatgaattcaattttgtgattgatattggaggaccaatcctatggtatgactgcaacaaagcctacaactcttc |
7710777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 277
Target Start/End: Original strand, 7732897 - 7733087
Alignment:
| Q |
93 |
ctcacaatagccattctctcattttcttgttcatcacaa---ttcatcttacccattgaaaaagacccattaaccaatcttttctacacctcagttggca |
189 |
Q |
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| T |
7732897 |
ctcacaatagcccttctctcattttcttgctcatcacaacagttcttctcaccagttgaaaaagacccaataaccaatctattctccacattactttggg |
7732996 |
T |
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| Q |
190 |
ttggaaca---cctcaacacaatttcaatctagtgattgatattggaggaccaattatatggtatgactgcaacaaaaactataactcttc |
277 |
Q |
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| T |
7732997 |
taggaacagaacctacacatgaattcaattttgtgattgatattggaggaccaatcctatggtatgactgcaacaaagcctacaactcttc |
7733087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 264
Target Start/End: Complemental strand, 7747008 - 7746831
Alignment:
| Q |
93 |
ctcacaatagccattctctcattttcttgttcatcacaa---ttcatcttacccattgaaaaagacccattaaccaatcttttctacacctcagttggca |
189 |
Q |
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| T |
7747008 |
ctcacaatagtccttctctcattttcatgctcatcacaacagttcttctcaccaattgaaaaagactcattaaccaatctatattccacttcacttgata |
7746909 |
T |
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| Q |
190 |
ttggaaca---cctcaacacaatttcaatctagtgattgatattggaggaccaattatatggtatgactgcaacaaaa |
264 |
Q |
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| T |
7746908 |
taggaacagaacctacacatcaattcaatcttgtgattgatattggaggaccaatcttatggtatgactgcaacaaaa |
7746831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 277
Target Start/End: Original strand, 7725438 - 7725677
Alignment:
| Q |
50 |
cattaaactcataatggcttcttttgcaactcttttctcc-ctc-----ctcacaatagccattctctcattttcttgttcatcacaa---ttcatctta |
140 |
Q |
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| T |
7725438 |
cattgaactcacaatggcttcttttgctacacttttctcctctctaattctcacagtagcccttctctcattttcttgctcatcacaacagttcttctca |
7725537 |
T |
|
| Q |
141 |
cccattgaaaaagacccattaaccaatcttttctacacctcagttggcattggaaca---cctcaacacaatttcaatctagtgattgatattggaggac |
237 |
Q |
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| T |
7725538 |
ccagttgaaaaagacccaataaccaatctatactccactttactttgggtaggatcattacctacacatgaattcaattttgtgattgatattggaggac |
7725637 |
T |
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| Q |
238 |
caattatatggtatgactgcaacaaaaactataactcttc |
277 |
Q |
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| T |
7725638 |
caatcctatggtatgactgcaacaaaacctacaattcttc |
7725677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 7775130 - 7775082
Alignment:
| Q |
148 |
aaaaagacccattaaccaatcttttctacacctcagttggcattggaac |
196 |
Q |
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| T |
7775130 |
aaaaagacccatcaaccaatctattctacacatcagttggcataggaac |
7775082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 7767802 - 7767755
Alignment:
| Q |
149 |
aaaagacccattaaccaatcttttctacacctcagttggcattggaac |
196 |
Q |
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| T |
7767802 |
aaaagacccatcaaccaatctattctacacatcagttggcataggaac |
7767755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 10971 - 11022
Alignment:
| Q |
150 |
aaagacccattaaccaatcttttctacacctcagttggcattggaacacctc |
201 |
Q |
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| T |
10971 |
aaagacccatcaaccaatcttttctacacatcagttggcataggaacacctc |
11022 |
T |
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