View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_46 (Length: 237)
Name: NF15554_high_46
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_46 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 80 - 237
Target Start/End: Complemental strand, 17664583 - 17664426
Alignment:
| Q |
80 |
tagttagcaatcaattatttaaacagataaaaatgcaagccggctttaggaaaaattaacaaaaagctaacttaacttaaccaatagtccaagtaatcta |
179 |
Q |
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| T |
17664583 |
tagttagcaatcaattatttaaacagataaaaatgcaagccggctttaggaaaaattaacaaaaagctaacttaacttaaccaatagtccaagtaatcta |
17664484 |
T |
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| Q |
180 |
ggtaactttggcaaagtattattgattttcctcagttcctctctaactgtttgcagcc |
237 |
Q |
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| T |
17664483 |
ggtaactttggcaaagtattattgattttcctcagttcctctctatctgtttgcagcc |
17664426 |
T |
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