View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_high_53 (Length: 217)
Name: NF15554_high_53
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 31218841 - 31219040
Alignment:
| Q |
1 |
agcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgactagactctcca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
31218841 |
agcagcattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgattggactctcca |
31218940 |
T |
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| Q |
101 |
ctttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctcttaggtttttcctaggaactccttggcctcctcaacctttg |
200 |
Q |
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| T |
31218941 |
ctttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctctgaggtttttcctaggaactccttggcctcctcaacctttg |
31219040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 31213086 - 31213285
Alignment:
| Q |
1 |
agcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgactagactctcca |
100 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |
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| T |
31213086 |
agcagcattctgctcaccttcttcaaacttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgaatggaatctcca |
31213185 |
T |
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| Q |
101 |
ctttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctcttaggtttttcctaggaactccttggcctcctcaacctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31213186 |
ctttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctctgaggtttttcctaggaactccttggcctcctcaacctttg |
31213285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 47896388 - 47896189
Alignment:
| Q |
1 |
agcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgactagactctcca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |
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| T |
47896388 |
agcagcattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgattggattctcca |
47896289 |
T |
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| Q |
101 |
ctttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctcttaggtttttcctaggaactccttggcctcctcaacctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47896288 |
ctttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctctgaggtttttcctaggaactccttggcctcctcaacctttg |
47896189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 4958281 - 4958377
Alignment:
| Q |
1 |
agcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgtgactagactct |
97 |
Q |
| |
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|||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| | || ||||||||||||||||||| |||||| |
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| T |
4958281 |
agcagcattctgctcaccttcagcaatcttagaagtttgtgcacgttgtcgcttccttgtactgttaccagtagctttctcagtgtgactggactct |
4958377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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