View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15554_low_10 (Length: 558)

Name: NF15554_low_10
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15554_low_10
NF15554_low_10
[»] chr2 (25 HSPs)
chr2 (180-540)||(4981273-4981633)
chr2 (97-144)||(42283136-42283183)
chr2 (60-141)||(3091842-3091923)
chr2 (1-35)||(6851654-6851688)
chr2 (60-141)||(13104580-13104661)
chr2 (100-142)||(14714127-14714169)
chr2 (60-141)||(32750099-32750180)
chr2 (61-141)||(7086013-7086093)
chr2 (104-140)||(9202406-9202442)
chr2 (103-143)||(34138923-34138963)
chr2 (103-142)||(7428572-7428611)
chr2 (1-36)||(36383504-36383539)
chr2 (1-36)||(44484650-44484685)
chr2 (60-141)||(11164265-11164346)
chr2 (1-35)||(39133764-39133798)
chr2 (142-171)||(4981230-4981259)
chr2 (111-144)||(12066065-12066098)
chr2 (100-141)||(34249722-34249763)
chr2 (100-141)||(36133115-36133156)
chr2 (1-30)||(42678588-42678617)
chr2 (104-145)||(45693352-45693393)
chr2 (103-143)||(5455340-5455380)
chr2 (103-143)||(11229208-11229248)
chr2 (100-144)||(12600189-12600233)
chr2 (109-141)||(19913935-19913967)
[»] chr8 (22 HSPs)
chr8 (60-141)||(23258133-23258214)
chr8 (100-145)||(9046956-9047001)
chr8 (60-141)||(28927782-28927863)
chr8 (60-141)||(40413252-40413333)
chr8 (104-142)||(37101573-37101611)
chr8 (100-141)||(5502503-5502544)
chr8 (109-141)||(40842074-40842106)
chr8 (103-150)||(34474095-34474142)
chr8 (60-138)||(38128418-38128496)
chr8 (103-141)||(1370184-1370222)
chr8 (103-141)||(11879378-11879416)
chr8 (103-141)||(11896794-11896832)
chr8 (1-35)||(14228749-14228783)
chr8 (103-141)||(30925543-30925581)
chr8 (103-141)||(39719130-39719168)
chr8 (5-35)||(43587687-43587717)
chr8 (103-141)||(45101540-45101578)
chr8 (1-30)||(5924852-5924881)
chr8 (1-30)||(6105436-6105465)
chr8 (100-141)||(21273599-21273640)
chr8 (1-30)||(35595252-35595281)
chr8 (104-141)||(42768010-42768047)
[»] chr7 (25 HSPs)
chr7 (100-150)||(12142025-12142075)
chr7 (60-146)||(46651773-46651859)
chr7 (100-141)||(43445548-43445589)
chr7 (100-147)||(8792483-8792530)
chr7 (97-144)||(21858885-21858932)
chr7 (1-36)||(42060698-42060733)
chr7 (60-141)||(5978680-5978761)
chr7 (100-142)||(10591293-10591335)
chr7 (102-140)||(21839023-21839061)
chr7 (103-152)||(7390652-7390701)
chr7 (100-143)||(40717125-40717169)
chr7 (106-141)||(32171024-32171059)
chr7 (103-141)||(7807199-7807237)
chr7 (2-36)||(33881699-33881733)
chr7 (60-141)||(37351879-37351960)
chr7 (60-141)||(44894363-44894444)
chr7 (1-30)||(1790033-1790062)
chr7 (100-141)||(6353870-6353911)
chr7 (103-144)||(40842551-40842592)
chr7 (104-141)||(43657147-43657184)
chr7 (1-29)||(2323335-2323363)
chr7 (3-35)||(3341743-3341775)
chr7 (103-143)||(25887727-25887767)
chr7 (103-139)||(32154441-32154477)
chr7 (104-140)||(36990185-36990221)
[»] chr4 (32 HSPs)
chr4 (60-141)||(31275247-31275328)
chr4 (60-143)||(5234358-5234441)
chr4 (97-147)||(47998731-47998781)
chr4 (60-141)||(55927085-55927166)
chr4 (60-143)||(38952790-38952873)
chr4 (100-146)||(1580166-1580213)
chr4 (1-36)||(29513690-29513725)
chr4 (100-147)||(42915102-42915149)
chr4 (1-36)||(56025298-56025333)
chr4 (1-35)||(47519715-47519749)
chr4 (103-140)||(9567580-9567617)
chr4 (61-141)||(25523085-25523165)
chr4 (100-137)||(51389457-51389494)
chr4 (100-143)||(41609558-41609602)
chr4 (103-143)||(41951680-41951720)
chr4 (1-36)||(51224832-51224867)
chr4 (100-142)||(15596537-15596579)
chr4 (103-141)||(22257085-22257123)
chr4 (103-141)||(31240793-31240831)
chr4 (60-141)||(31658020-31658101)
chr4 (60-141)||(36444284-36444365)
chr4 (103-141)||(36792477-36792515)
chr4 (100-141)||(1033289-1033330)
chr4 (100-144)||(2613502-2613547)
chr4 (104-141)||(30973728-30973765)
chr4 (100-141)||(36408093-36408134)
chr4 (100-141)||(36413216-36413257)
chr4 (1-30)||(40721964-40721993)
chr4 (100-141)||(46173678-46173719)
chr4 (104-141)||(48372114-48372151)
chr4 (103-143)||(6953274-6953314)
chr4 (103-142)||(38960547-38960587)
[»] chr3 (24 HSPs)
chr3 (60-141)||(7231895-7231976)
chr3 (60-143)||(29706004-29706087)
chr3 (1-36)||(27162463-27162498)
chr3 (61-143)||(28300533-28300615)
chr3 (60-133)||(11173551-11173624)
chr3 (60-141)||(46473229-46473310)
chr3 (100-137)||(9028014-9028051)
chr3 (104-141)||(32457642-32457679)
chr3 (97-138)||(44695150-44695191)
chr3 (60-143)||(48649682-48649765)
chr3 (1-36)||(41877730-41877765)
chr3 (60-142)||(41957614-41957696)
chr3 (103-150)||(44365172-44365218)
chr3 (60-138)||(49130955-49131033)
chr3 (1-35)||(2482669-2482703)
chr3 (103-141)||(6126599-6126637)
chr3 (60-141)||(20380778-20380859)
chr3 (103-141)||(31997947-31997985)
chr3 (103-141)||(43169643-43169681)
chr3 (103-141)||(51464155-51464193)
chr3 (103-144)||(31249207-31249248)
chr3 (100-141)||(33007502-33007543)
chr3 (104-141)||(46953094-46953131)
chr3 (102-142)||(34662950-34662990)
[»] chr6 (10 HSPs)
chr6 (97-148)||(2241708-2241759)
chr6 (100-143)||(32853031-32853074)
chr6 (104-141)||(1434565-1434602)
chr6 (1-36)||(237392-237427)
chr6 (1-35)||(25924859-25924893)
chr6 (1-30)||(21210301-21210330)
chr6 (104-141)||(25166770-25166807)
chr6 (100-141)||(30733150-30733191)
chr6 (100-141)||(32253922-32253963)
chr6 (97-133)||(12187084-12187120)
[»] chr5 (33 HSPs)
chr5 (100-151)||(2117519-2117570)
chr5 (60-142)||(39595375-39595457)
chr5 (60-141)||(33567128-33567209)
chr5 (60-136)||(34381113-34381189)
chr5 (61-140)||(125194-125273)
chr5 (103-143)||(40223672-40223712)
chr5 (97-140)||(12349923-12349966)
chr5 (1-36)||(32379923-32379958)
chr5 (1-36)||(41192629-41192664)
chr5 (100-146)||(9403654-9403700)
chr5 (60-145)||(12718265-12718350)
chr5 (1-35)||(16553546-16553580)
chr5 (100-145)||(9714020-9714065)
chr5 (60-143)||(36624419-36624502)
chr5 (103-142)||(3141640-3141679)
chr5 (1-36)||(12417668-12417703)
chr5 (1-36)||(19271901-19271936)
chr5 (1-36)||(22920486-22920521)
chr5 (100-143)||(24431505-24431548)
chr5 (103-141)||(11306840-11306878)
chr5 (60-145)||(12779491-12779576)
chr5 (103-137)||(14206534-14206568)
chr5 (60-141)||(20719904-20719985)
chr5 (103-141)||(21749503-21749541)
chr5 (2-36)||(26685734-26685768)
chr5 (2-36)||(26955465-26955499)
chr5 (103-145)||(31284279-31284321)
chr5 (100-134)||(43482506-43482540)
chr5 (103-144)||(1774171-1774212)
chr5 (104-141)||(5130266-5130303)
chr5 (109-141)||(6515328-6515360)
chr5 (103-147)||(19127268-19127312)
chr5 (103-142)||(39032491-39032531)
[»] chr1 (24 HSPs)
chr1 (100-141)||(2362510-2362551)
chr1 (60-142)||(40610330-40610412)
chr1 (103-141)||(5304719-5304757)
chr1 (100-141)||(28716284-28716325)
chr1 (100-141)||(49453618-49453659)
chr1 (1-36)||(2257688-2257723)
chr1 (103-142)||(4638069-4638108)
chr1 (1-36)||(5383801-5383836)
chr1 (104-143)||(7645441-7645480)
chr1 (103-141)||(18959148-18959187)
chr1 (97-140)||(51703002-51703045)
chr1 (103-141)||(8391228-8391266)
chr1 (103-141)||(31480023-31480061)
chr1 (5-35)||(43196084-43196114)
chr1 (103-141)||(48872840-48872878)
chr1 (103-141)||(49425880-49425918)
chr1 (2-35)||(19651453-19651486)
chr1 (100-141)||(37843324-37843365)
chr1 (97-142)||(47187573-47187618)
chr1 (100-141)||(51571567-51571608)
chr1 (121-153)||(12708258-12708290)
chr1 (121-153)||(12717803-12717835)
chr1 (97-137)||(27687415-27687455)
chr1 (107-143)||(37516059-37516095)
[»] scaffold0018 (1 HSPs)
scaffold0018 (100-141)||(36142-36184)
[»] scaffold0204 (1 HSPs)
scaffold0204 (104-141)||(27485-27522)
[»] scaffold0001 (1 HSPs)
scaffold0001 (104-141)||(396007-396044)
[»] scaffold0449 (1 HSPs)
scaffold0449 (104-147)||(7976-8019)
[»] scaffold0172 (1 HSPs)
scaffold0172 (1-35)||(17017-17051)
[»] scaffold0060 (1 HSPs)
scaffold0060 (103-141)||(6961-6999)
[»] scaffold0115 (1 HSPs)
scaffold0115 (100-141)||(15078-15119)
[»] scaffold0036 (1 HSPs)
scaffold0036 (104-141)||(18148-18185)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 180 - 540
Target Start/End: Original strand, 4981273 - 4981633
Alignment:
Q  180 agggaccaaaactataattatagctatttcattttaaagtaggaaatttcattaaataaatccatgacatcttgattgtttagactaaattaacaaattt 279  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  4981273 agggacctaaactgtaattatagctatttcattttaaagtaggaaatttcattaaataaatccatgacatcttgatagtttagaccaaattaacaaattt 4981372  T
Q  280 tataaaccgttgagactacccatttatttatttattggaagataggggctacttattatatttatataatttagagagtggattagagagaagataataa 379  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4981373 tataaaccgttgagactgcccatttatttatttattggaagataggggctacttattatatttatataatttagagagtggattagagagaagataataa 4981472  T
Q  380 ttagtgactaaattgatgatttattcaatatttaaattatggtgcttttaataattagtgattaacctacttttgtgcattcaaagagtacgtttaattt 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4981473 ttagtgactaaattgatgatttattcaatatttaaattatggtgcttttaataattagtgattaacctagttttgtgcattcaaagagtacgtttaattt 4981572  T
Q  480 tatcttggtatattttgtttttccctaaactgcaaaagcatctaatttcataccataaaca 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4981573 tatcttggtatattttgtttttccctaaactgcaaaagcatctaatttcataccataaaca 4981633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 42283183 - 42283136
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactcatt 144  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||    
T  42283183 ttatcacaaaaattgaatgaaatggttgttcaaatatcactactcatt 42283136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 3091842 - 3091923
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||  ||||||||||||||||||||    
T  3091842 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatcactactc 3091923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6851688 - 6851654
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  6851688 caactttctctctcatactcacatgatgttgttat 6851654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 13104580 - 13104661
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || ||||||||||||| ||| ||||||||||||||| ||||||||    
T  13104580 cattgtttttgaccaatgaaaagagagaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactc 13104661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 14714127 - 14714169
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  14714127 tcacaaaaattgtctcaaatggatgttcaaatatcactactca 14714169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 32750099 - 32750180
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || ||||||||||||| ||| ||||||||||||||| ||||||||    
T  32750099 cattgtttttgaccaatgaaaagagagaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactc 32750180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 7086093 - 7086013
Alignment:
Q  61 attgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||||||||||||||||||          || ||||||||||||| ||| ||||||||||||||| ||||||||    
T  7086093 attgtttttgaccaatgaaaagagagagaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactc 7086013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 9202442 - 9202406
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactact 140  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9202442 aaaaattgtatgaaatggttgttcaaatatcactact 9202406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 34138963 - 34138923
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  34138963 caaaagttgtatgaaatggttgttcaaatatcactactcat 34138923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 7428572 - 7428611
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  7428572 caaaaattgtatgaaatggttgttcaaatatcactgctca 7428611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36383504 - 36383539
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  36383504 caactttctctctcatactcacatgatgttcttatc 36383539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44484685 - 44484650
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  44484685 caactttctctctcatactcacatgatgttcttatc 44484650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 11164346 - 11164265
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||| ||||||||||||||||          || |||||||| ||||||||||| |||||||||||||||| ||||    
T  11164346 cattgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 11164265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39133764 - 39133798
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttat 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  39133764 caactttctctctcatactcatatgatgttgttat 39133798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 4981230 - 4981259
Alignment:
Q  142 attttaaaatagagaagtcaattccattag 171  Q
    ||||||||||||||||||||||||||||||    
T  4981230 attttaaaatagagaagtcaattccattag 4981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 12066065 - 12066098
Alignment:
Q  111 gtatcaaatggttgttcaaatatcactactcatt 144  Q
    ||||||| ||||||||||||||||||||||||||    
T  12066065 gtatcaattggttgttcaaatatcactactcatt 12066098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 34249722 - 34249763
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  34249722 tcacaaaaattgtctcatatggttgttcaaataacactactc 34249763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 36133115 - 36133156
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| |||||| |||| |||||||||||||||||||||    
T  36133115 tcacaaaagttgtatgaaatagttgttcaaatatcactactc 36133156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42678588 - 42678617
Alignment:
Q  1 caactttctctctcatactcacatgatgtt 30  Q
    ||||||||||||||||||||||||||||||    
T  42678588 caactttctctctcatactcacatgatgtt 42678617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 45693393 - 45693352
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactcattt 145  Q
    |||| |||| ||||||||||||| ||||||||||||||||||    
T  45693393 aaaagttgtctcaaatggttgtttaaatatcactactcattt 45693352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 5455380 - 5455340
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    ||||| |||||| |||||||||||||||||| |||||||||    
T  5455380 caaaagttgtataaaatggttgttcaaatattactactcat 5455340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 11229248 - 11229208
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  11229248 caaaagttgtctaaaatggttgttcaaatatcactactcat 11229208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 12600189 - 12600233
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcatt 144  Q
    |||||||| |||||| |||| |||||||||||||||||| |||||    
T  12600189 tcacaaaagttgtatgaaatagttgttcaaatatcactattcatt 12600233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 19913935 - 19913967
Alignment:
Q  109 ttgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||| ||||||||||||||||||||||||||    
T  19913935 ttgtatgaaatggttgttcaaatatcactactc 19913967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 23258133 - 23258214
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || ||||||||||||| ||||||||||||||||||||||||||||    
T  23258133 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaaattgtttcaaatggttgttcaaatatcactactc 23258214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 9047001 - 9046956
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcattt 145  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  9047001 tcacaaaaattgtatcaaatagttgttcaaatatcactactcattt 9046956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 28927782 - 28927863
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || ||||||||||| ||||||||||||||||||||||||| ||||    
T  28927782 cattgtttttgaccaatgaaaagagagagaaaagaagttgtcacaaaaattttatcaaatggttgttcaaatatcaccactc 28927863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 40413333 - 40413252
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||||| |||||||||||||          |||||| |||| |||||||||||||||||||||||||||||||||    
T  40413333 cattgtttttgactaatgaaaagagagaaaaaagaagttatcataaaagttgtatcaaatggttgttcaaatatcactactc 40413252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 37101611 - 37101573
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  37101611 aaaaattgtatgaaatggttgttcaaatatcactactca 37101573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 5502503 - 5502544
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  5502503 tcacaaaaattatatcaaatgattgttcaaatatcactactc 5502544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 40842074 - 40842106
Alignment:
Q  109 ttgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||||||||    
T  40842074 ttgtatcaaatggttgttcaaatatcactactc 40842106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 34474095 - 34474142
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcattttaaaa 150  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||    
T  34474095 caaaagttgtatgaaatggttgttcaaatatcattactctttttaaaa 34474142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 38128496 - 38128418
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcacta 138  Q
    ||||||||||||||||||||||| |||          || ||||||||||||| | |||||||||||||||||||||||    
T  38128496 cattgtttttgaccaatgaaaagtgagaaaaaagaagttgtcacaaaaattgtttaaaatggttgttcaaatatcacta 38128418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 1370222 - 1370184
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  1370222 caaaaattgtctcaaatggatgttcaaatatcactactc 1370184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 11879416 - 11879378
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  11879416 caaaaattgtatgaaatggtttttcaaatatcactactc 11879378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 11896832 - 11896794
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  11896832 caaaaattgtatgaaatggtttttcaaatatcactactc 11896794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14228749 - 14228783
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttat 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  14228749 caactttctctctcatactcacatgatgttcttat 14228783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 30925581 - 30925543
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  30925581 caaaagttgtataaaatggttgttcaaatatcactactc 30925543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 39719168 - 39719130
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  39719168 caaaaattgtctcaaatggttgttaaaatatcactactc 39719130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 43587687 - 43587717
Alignment:
Q  5 tttctctctcatactcacatgatgttgttat 35  Q
    |||||||||||||||||||||||||||||||    
T  43587687 tttctctctcatactcacatgatgttgttat 43587717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 45101540 - 45101578
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  45101540 caaaagttgtatgaaatggttgttcaaatatcactactc 45101578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 5924852 - 5924881
Alignment:
Q  1 caactttctctctcatactcacatgatgtt 30  Q
    ||||||||||||||||||||||||||||||    
T  5924852 caactttctctctcatactcacatgatgtt 5924881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6105465 - 6105436
Alignment:
Q  1 caactttctctctcatactcacatgatgtt 30  Q
    ||||||||||||||||||||||||||||||    
T  6105465 caactttctctctcatactcacatgatgtt 6105436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 21273640 - 21273599
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| |||||| |||| |||||||||||||||||||||    
T  21273640 tcacaaaagttgtatgaaatagttgttcaaatatcactactc 21273599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 35595252 - 35595281
Alignment:
Q  1 caactttctctctcatactcacatgatgtt 30  Q
    ||||||||||||||||||||||||||||||    
T  35595252 caactttctctctcatactcacatgatgtt 35595281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 42768047 - 42768010
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  42768047 aaaaattgtatgaaatgtttgttcaaatatcactactc 42768010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 12142025 - 12142075
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcattttaaaa 150  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  12142025 tcacaaaagttgtatcaaatggttgttcaaatatcactactcattgtaaaa 12142075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 46651773 - 46651859
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcatttt 146  Q
    |||||||||||||||||||||||||||          || |||||| |||||||||| |||||||||||||||||||||||| ||||    
T  46651773 cattgtttttgaccaatgaaaagagagaaaatagaagttgtcacaagaattgtatcatatggttgttcaaatatcactactcttttt 46651859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 43445548 - 43445589
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  43445548 tcacaaaaattgtatcaaatgattgttcaaatatcactactc 43445589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 8792530 - 8792483
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcatttta 147  Q
    |||||||| ||||||||||||||||||||||||||| ||||| |||||    
T  8792530 tcacaaaagttgtatcaaatggttgttcaaatatcattactcttttta 8792483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 21858885 - 21858932
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactcatt 144  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||||    
T  21858885 ttatcacaaaagttgtttaaaatggttgttcaaatatcactactcatt 21858932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42060698 - 42060733
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  42060698 caactttctctctcatactcacatgatgttgttatc 42060733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 5978680 - 5978761
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || |||||| | |||||||| ||||||||||||||||||||||||    
T  5978680 cattgtttttgaccaatgaaaagagagaaaatagaagttgtcacaagagttgtatcatatggttgttcaaatatcactactc 5978761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 10591293 - 10591335
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    |||||||| |||| |||||||||||||||||||||||||||||    
T  10591293 tcacaaaagttgtctcaaatggttgttcaaatatcactactca 10591335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 21839061 - 21839023
Alignment:
Q  102 acaaaaattgtatcaaatggttgttcaaatatcactact 140  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  21839061 acaaaaattgtatcaaatagttgttcaaatatcactact 21839023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 7390701 - 7390652
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcattttaaaata 152  Q
    |||||||||||| |||||||||||||||||||| | ||||| ||||||||    
T  7390701 caaaaattgtatgaaatggttgttcaaatatcaatcctcatattaaaata 7390652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 40717169 - 40717125
Alignment:
Q  100 tcacaaaaa-ttgtatcaaatggttgttcaaatatcactactcat 143  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||    
T  40717169 tcacaaaaagttgtatgaaatggttgttcaaatatcactactcat 40717125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 32171059 - 32171024
Alignment:
Q  106 aaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||| ||||||||||||||||||||||||||||    
T  32171059 aaattgtctcaaatggttgttcaaatatcactactc 32171024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 7807199 - 7807237
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  7807199 caaaagttgtatgaaatggttgttcaaatatcactactc 7807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 33881733 - 33881699
Alignment:
Q  2 aactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||||||||||||||||||||| |||||    
T  33881733 aactttctctctcatactcacatgatgttattatc 33881699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 37351960 - 37351879
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||||||||| |||||||||          || |||||||| || ||||||||| ||||||||||||||||||||    
T  37351960 cattgtttttgaccaataaaaagagagaaaaaagaaattgtcacaaaagttatatcaaatgattgttcaaatatcactactc 37351879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 44894444 - 44894363
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||| ||||||||||||||||          || ||||||||||| | |||||||| |||||||||||||||||||    
T  44894444 cattgttttttaccaatgaaaagagagataaaagaagttgtcacaaaaattatctcaaatggatgttcaaatatcactactc 44894363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1790033 - 1790062
Alignment:
Q  1 caactttctctctcatactcacatgatgtt 30  Q
    ||||||||||||||||||||||||||||||    
T  1790033 caactttctctctcatactcacatgatgtt 1790062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 6353870 - 6353911
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| ||||||||||| ||| |||||||||||||||||    
T  6353870 tcacaaaagttgtatcaaatagtttttcaaatatcactactc 6353911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 40842551 - 40842592
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcatt 144  Q
    ||||| |||||| |||||||||||||||||||| ||||||||    
T  40842551 caaaagttgtatgaaatggttgttcaaatatcattactcatt 40842592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 43657147 - 43657184
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  43657147 aaaagttgtatgaaatggttgttcaaatatcactactc 43657184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2323335 - 2323363
Alignment:
Q  1 caactttctctctcatactcacatgatgt 29  Q
    |||||||||||||||||||||||||||||    
T  2323335 caactttctctctcatactcacatgatgt 2323363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 3341743 - 3341775
Alignment:
Q  3 actttctctctcatactcacatgatgttgttat 35  Q
    |||||||||||||||||||||||||||| ||||    
T  3341743 actttctctctcatactcacatgatgttattat 3341775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 25887727 - 25887767
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  25887727 caaaagttgtctaaaatggttgttcaaatatcactactcat 25887767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 32154477 - 32154441
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactac 139  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  32154477 caaaagttgtatgaaatggttgttcaaatatcactac 32154441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 36990185 - 36990221
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactact 140  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  36990185 aaaaattatatgaaatggttgttcaaatatcactact 36990221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 31275247 - 31275328
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||||||||||||||||||||||||    
T  31275247 cattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 31275328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 5234441 - 5234358
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    ||||||||||||||||| |||||||||          || |||||||| |||||||||||||||||||||||||||||||||||    
T  5234441 cattgtttttgaccaataaaaagagagaaaaaaaaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactcat 5234358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 47998731 - 47998781
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactcatttta 147  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  47998731 ttatcacaaaagttgtatcaaatgattgttcaaatatcactactcttttta 47998781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 55927085 - 55927166
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || ||||||||||||| |||||||| |||||||||||||||||||    
T  55927085 cattgtttttgaccaatgaaaagagagagaaaagaaattgtcacaaaaattgtctcaaatggatgttcaaatatcactactc 55927166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 38952790 - 38952873
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    |||||||||||||||||||||| ||||          |||||||||||||||||||||||  ||||| ||||||||||||||||    
T  38952790 cattgtttttgaccaatgaaaaaagagaaaaaagaaattatcacaaaaattgtatcaaataattgtttaaatatcactactcat 38952873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 1580213 - 1580166
Alignment:
Q  100 tcacaaaaa-ttgtatcaaatggttgttcaaatatcactactcatttt 146  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  1580213 tcacaaaaagttgtatgaaatggttgttcaaatatcactactcatttt 1580166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29513725 - 29513690
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  29513725 caactttctctctcatactcacatgatgttgttatc 29513690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 42915149 - 42915102
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcatttta 147  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  42915149 tcacaaaagttgtatcaaatagttgttcaaatatcactactcttttta 42915102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 56025298 - 56025333
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  56025298 caactttctctctcatactcacatgatgttgttatc 56025333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47519749 - 47519715
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  47519749 caactttctctctcatactcacatgatgttgttat 47519715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 9567617 - 9567580
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactact 140  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9567617 caaaaattgtataaaatggttgttcaaatatcactact 9567580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 25523165 - 25523085
Alignment:
Q  61 attgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||||||||||||||||||          ||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  25523165 attgtttttgaccaatgaaaagagagagaaaataagttatcacaaaagttgtctcatatggttgttcaaataacactactc 25523085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 51389457 - 51389494
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcact 137  Q
    |||||||| |||||||||||||||||||||||||||||    
T  51389457 tcacaaaagttgtatcaaatggttgttcaaatatcact 51389494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 41609602 - 41609558
Alignment:
Q  100 tcacaaaaattgt-atcaaatggttgttcaaatatcactactcat 143  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||    
T  41609602 tcacaaaaattgtcatcaaatggttgttcaaatatcattactcat 41609558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 41951680 - 41951720
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  41951680 caaaaattatatgaaatggttgttcaaatatcactactcat 41951720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 51224867 - 51224832
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  51224867 caactttctctctcatactcacatgatgttattatc 51224832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 15596537 - 15596579
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    |||||||| |||| | |||||||||||||||||||||||||||    
T  15596537 tcacaaaagttgtttaaaatggttgttcaaatatcactactca 15596579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 22257123 - 22257085
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  22257123 caaaagttgtatgaaatggttgttcaaatatcactactc 22257085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 31240793 - 31240831
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  31240793 caaaagttgtatgaaatggttgttcaaatatcactactc 31240831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 31658020 - 31658101
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||||||||||||||| |||          || ||||||||  ||||||||||||||||||||||||| ||||||    
T  31658020 cattgtttttgaccaatgaaaagtgagaaaaaagaagttgtcacaaaagctgtatcaaatggttgttcaaatatcgctactc 31658101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 36444365 - 36444284
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||| ||||          || |||||| |||||||||| ||| ||||||||||||||||||||    
T  36444365 cattgtttttgaccaatgaaaaaagagaaaatagaagttgtcacaagaattgtatcatatgattgttcaaatatcactactc 36444284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 36792477 - 36792515
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  36792477 caaaagttgtatgaaatggttgttcaaatatcactactc 36792515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 1033289 - 1033330
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| |||| | ||||||||||||||||||||||||||    
T  1033289 tcacaaaagttgtttaaaatggttgttcaaatatcactactc 1033330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 2613547 - 2613502
Alignment:
Q  100 tcacaaaaattgt-atcaaatggttgttcaaatatcactactcatt 144  Q
    |||||||| |||| ||||||||||||||||||||||| ||||||||    
T  2613547 tcacaaaagttgttatcaaatggttgttcaaatatcattactcatt 2613502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 30973728 - 30973765
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  30973728 aaaaattgtatgaaatagttgttcaaatatcactactc 30973765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 36408134 - 36408093
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| ||||||||||| |||||||||||||||| ||||    
T  36408134 tcacaaaagttgtatcaaatagttgttcaaatatcaccactc 36408093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 36413257 - 36413216
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| ||||||||||| |||||||||||||||| ||||    
T  36413257 tcacaaaagttgtatcaaatagttgttcaaatatcaccactc 36413216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 40721993 - 40721964
Alignment:
Q  1 caactttctctctcatactcacatgatgtt 30  Q
    ||||||||||||||||||||||||||||||    
T  40721993 caactttctctctcatactcacatgatgtt 40721964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 46173678 - 46173719
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| ||||||||||||||| ||||||||||| |||||    
T  46173678 tcacaaaagttgtatcaaatggttattcaaatatcattactc 46173719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 48372151 - 48372114
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  48372151 aaaaattgtatgaaatagttgttcaaatatcactactc 48372114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 6953314 - 6953274
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    ||||| |||||  ||||||||||||||||||||||||||||    
T  6953314 caaaagttgtaagaaatggttgttcaaatatcactactcat 6953274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 38960587 - 38960547
Alignment:
Q  103 caaaaattgtatcaaatg-gttgttcaaatatcactactca 142  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  38960587 caaaaattgtatcaaaagagttgttcaaatatcactactca 38960547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 7231976 - 7231895
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||||||||||||||||||||||||    
T  7231976 cattgtttttgaccaatgaaaagagagaaaaaataaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 7231895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 29706004 - 29706087
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    |||||||||| ||||||||||||||||          || |||||||| ||||||||||| |||||||||||||||||||||||    
T  29706004 cattgttttttaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactcat 29706087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27162498 - 27162463
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  27162498 caactttctctctcatactcacatgatgttgttatc 27162463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 28300615 - 28300533
Alignment:
Q  61 attgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    ||||||||||||||||||||||||||          || |||||| | |||||||| ||||||||||||||||||||||||||    
T  28300615 attgtttttgaccaatgaaaagagagaaaataaaagttgtcacaagagttgtatcatatggttgttcaaatatcactactcat 28300533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 11173551 - 11173624
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatat 133  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||||||||||||||||    
T  11173551 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatat 11173624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 46473229 - 46473310
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || ||| |||| ||||||||||||||||||||||||||| |||||    
T  46473229 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaatatcattactc 46473310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 9028014 - 9028051
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcact 137  Q
    |||||||||| |||||||||||||||||||||||||||    
T  9028014 tcacaaaaatcgtatcaaatggttgttcaaatatcact 9028051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 32457679 - 32457642
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||| |||||||||||||||||||||    
T  32457679 aaaaattgtatcaaatagttgttcaaatatcactactc 32457642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 44695150 - 44695191
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatatcacta 138  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  44695150 ttatcacaaaagttgtatgaaatggttgttcaaatatcacta 44695191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 48649682 - 48649765
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    |||||||||||||||||||||| ||||          |||||||||||||| | ||| ||||||||||||||| ||||||||||    
T  48649682 cattgtttttgaccaatgaaaaaagagagaaaataagttatcacaaaaattatctcatatggttgttcaaataacactactcat 48649765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41877730 - 41877765
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  41877730 caactttctctctcatactcacatgatgttattatc 41877765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 41957614 - 41957696
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    ||||||||||||||||||||||| |||          ||||||||||| |||| | ||||||||||| |||||||||||||||    
T  41957614 cattgtttttgaccaatgaaaagtgagaaaaaagaaattatcacaaaagttgtttaaaatggttgtttaaatatcactactca 41957696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 44365218 - 44365172
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcattttaaaa 150  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  44365218 caaaaattgtataaaatggttgttcaaatatcaccactc-ttttaaaa 44365172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 49130955 - 49131033
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcacta 138  Q
    ||||||||||||| |||||||||||||          || ||||||||||||| |||||||| ||||||||||||||||    
T  49130955 cattgtttttgactaatgaaaagagagagaaaagaagttgtcacaaaaattgtctcaaatggatgttcaaatatcacta 49131033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2482703 - 2482669
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  2482703 caactttctctctcataatcacatgatgttgttat 2482669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 6126599 - 6126637
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  6126599 caaaagttgtatgaaatggttgttcaaatatcactactc 6126637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 20380859 - 20380778
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||||||||||||||| |||          || |||||||| |||| | ||||||||||||||||||||||||||    
T  20380859 cattgtttttgaccaatgaaaagtgagaaaaaagaagttgtcacaaaagttgtttaaaatggttgttcaaatatcactactc 20380778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 31997947 - 31997985
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  31997947 caaaagttgtctcaaatggttgttcaaatatcactactc 31997985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 43169681 - 43169643
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  43169681 caaaagttgtatgaaatggttgttcaaatatcactactc 43169643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 51464193 - 51464155
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  51464193 caaaagttgtataaaatggttgttcaaatatcactactc 51464155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 31249248 - 31249207
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcatt 144  Q
    ||||| |||||| |||||||||||||||||||||| ||||||    
T  31249248 caaaagttgtatgaaatggttgttcaaatatcactcctcatt 31249207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 33007502 - 33007543
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  33007502 tcacaaaaattgtctcatatggttgttcaaataacactactc 33007543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 46953094 - 46953131
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  46953094 aaaagttgtatcaaatagttgttcaaatatcactactc 46953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 34662990 - 34662950
Alignment:
Q  102 acaaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    ||||||||| | |||||||||||||||||||||||| ||||    
T  34662990 acaaaaattatttcaaatggttgttcaaatatcactgctca 34662950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 2241759 - 2241708
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactcattttaa 148  Q
    ||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  2241759 ttatcacaaaagttgtatcaaatggttgttcaaatatcactattctttttaa 2241708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 32853074 - 32853031
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  32853074 tcacaaaaattgtatcaaatagttgttcaaatatcactactcat 32853031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 1434602 - 1434565
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1434602 aaaaattgtatcaaatagttgttcaaatatcactactc 1434565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 237427 - 237392
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  237427 caactttctctctcatactcacatgatgttcttatc 237392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25924893 - 25924859
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttat 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  25924893 caactttctctctcatactcacatgatgttattat 25924859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 21210301 - 21210330
Alignment:
Q  1 caactttctctctcatactcacatgatgtt 30  Q
    ||||||||||||||||||||||||||||||    
T  21210301 caactttctctctcatactcacatgatgtt 21210330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 25166770 - 25166807
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  25166770 aaaaattgtatgaaatggttgtttaaatatcactactc 25166807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 30733150 - 30733191
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| |||| ||||||||||||| ||||||||||||||    
T  30733150 tcacaaaagttgtctcaaatggttgtttaaatatcactactc 30733191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 32253922 - 32253963
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| ||||| ||||| |||||||||||||||||||||    
T  32253922 tcacaaaagttgtaccaaatagttgttcaaatatcactactc 32253963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 12187084 - 12187120
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatat 133  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  12187084 ttatcaaaaatattgtatcaaatggttgttcaaatat 12187120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 2117570 - 2117519
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcattttaaaat 151  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  2117570 tcacaaaagttgtatcaaatagttgttcaaatatcactactctttttaaaat 2117519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 39595375 - 39595457
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    |||||||||||||||||||||||||||          || |||||||| ||||||||||||||||||||||||||| ||||||    
T  39595375 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcattactca 39595457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 33567209 - 33567128
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||||||||||          || |||||||| |||||||||||||||||||| ||||||||||||    
T  33567209 cattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcatatatcactactc 33567128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 34381113 - 34381189
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcac 136  Q
    |||||||||||||||||||||||||||          || ||||||||||| |||||||||||||||||||||||||    
T  34381113 cattgtttttgaccaatgaaaagagagaaaaacgaagttgtcacaaaaattatatcaaatggttgttcaaatatcac 34381189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 125194 - 125273
Alignment:
Q  61 attgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactact 140  Q
    ||||||||||||||||||||||||||          || || ||||| ||||||||||||||||||||||||||||||||    
T  125194 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcgcaaaagttgtatcaaatggttgttcaaatatcactact 125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 40223712 - 40223672
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  40223712 caaaaattgtatgaaatggttgttcaaatatcactactcat 40223672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 12349923 - 12349966
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatatcactact 140  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  12349923 ttatcacaaaagttgtatcaaatagttgttcaaatatcactact 12349966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32379958 - 32379923
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  32379958 caactttctctctcatactcacatgatgttgttatc 32379923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41192629 - 41192664
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  41192629 caactttctctctcatactcacatgatgttgttatc 41192664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 9403654 - 9403700
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcatttt 146  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||    
T  9403654 tcacaaaagttgtatcaaatggttgtttaaatatcactactcttttt 9403700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 12718350 - 12718265
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcattt 145  Q
    |||||||||||||||||||||||| ||          || |||||||||||||   ||||||||||||||||||||||||||||||    
T  12718350 cattgtttttgaccaatgaaaagaaagagaaaagaagttgtcacaaaaattgttgaaaatggttgttcaaatatcactactcattt 12718265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16553546 - 16553580
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  16553546 caactttctctctcatactcacatgatgttgttat 16553580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 9714065 - 9714020
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcattt 145  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||    
T  9714065 tcacaagagttgtatcatatggttgttcaaatatcactactcattt 9714020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 36624419 - 36624502
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    |||||||||||||||||||||||||||          || ||| | ||||||||||||||| |||||||||||||| |||||||    
T  36624419 cattgtttttgaccaatgaaaagagagaaaatgaaaattgtcaaataaattgtatcaaatgcttgttcaaatatcattactcat 36624502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 3141640 - 3141679
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  3141640 caaaagttgtatgaaatggttgttcaaatatcactactca 3141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12417668 - 12417703
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12417668 caactttctctttcatactcacatgatgttgttatc 12417703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 19271901 - 19271936
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  19271901 caactttctctctcatactcacatgatgttcttatc 19271936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22920521 - 22920486
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  22920521 caactttctctctcatactcacatgatgttcttatc 22920486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 24431548 - 24431505
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    |||||| | |||| ||||||||||||||||||||||||||||||    
T  24431548 tcacaatagttgtctcaaatggttgttcaaatatcactactcat 24431505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 11306840 - 11306878
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  11306840 caaaagttgtatcaaatagttgttcaaatatcactactc 11306878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 12779576 - 12779491
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactcattt 145  Q
    |||||||||||||||||||||||| ||          || |||||||||||||   |||||||| |||||||||||||||||||||    
T  12779576 cattgtttttgaccaatgaaaagaaagagaaaagaagttgtcacaaaaattgttgaaaatggttattcaaatatcactactcattt 12779491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 14206534 - 14206568
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcact 137  Q
    |||||||||||| ||||||||||||||||||||||    
T  14206534 caaaaattgtatgaaatggttgttcaaatatcact 14206568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 20719985 - 20719904
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||| ||||||||||||||||||||||          || |||||||| |||| |||||||| |||||||||||||||||||    
T  20719985 cattatttttgaccaatgaaaagagagagaaaagaagttgtcacaaaagttgtctcaaatggatgttcaaatatcactactc 20719904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 21749503 - 21749541
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  21749503 caaaaattatataaaatggttgttcaaatatcactactc 21749541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 26685734 - 26685768
Alignment:
Q  2 aactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||||||||||||||||||||| |||||    
T  26685734 aactttctctctcatactcacatgatgttattatc 26685768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 26955465 - 26955499
Alignment:
Q  2 aactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||||||||||||||||||||||||| |||||    
T  26955465 aactttctctctcatactcacatgatgttattatc 26955499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 31284321 - 31284279
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcattt 145  Q
    ||||| |||||| |||||||||||||||||||||| |||||||    
T  31284321 caaaagttgtatgaaatggttgttcaaatatcactgctcattt 31284279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 43482506 - 43482540
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatc 134  Q
    |||||||||||||||||||| ||||||||||||||    
T  43482506 tcacaaaaattgtatcaaatagttgttcaaatatc 43482540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 1774212 - 1774171
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcatt 144  Q
    |||||||||| | |||| ||||||||||||||||||||||||    
T  1774212 caaaaattgtctaaaatagttgttcaaatatcactactcatt 1774171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 5130303 - 5130266
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  5130303 aaaaattgtatgaaatagttgttcaaatatcactactc 5130266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 6515360 - 6515328
Alignment:
Q  109 ttgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||| ||||||||||||||||||||||||||    
T  6515360 ttgtatgaaatggttgttcaaatatcactactc 6515328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 19127268 - 19127312
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactcatttta 147  Q
    ||||| |||| | |||||||||||||||||||||||||| |||||    
T  19127268 caaaagttgtttaaaatggttgttcaaatatcactactcttttta 19127312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 39032531 - 39032491
Alignment:
Q  103 caaaaattgtatcaaatg-gttgttcaaatatcactactca 142  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  39032531 caaaaattgtatcaaaagagttgttcaaatatcactactca 39032491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 2362510 - 2362551
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  2362510 tcacaaaaattgtatcaaatagttgttcaaatatcactactc 2362551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 40610330 - 40610412
Alignment:
Q  60 cattgtttttgaccaatgaaaagagaggnnnnnnnnnttatcacaaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    |||||||||||||||||||||||||||          || |||||||| |||| |||||||| ||||||||||||||||||||    
T  40610330 cattgtttttgaccaatgaaaagagagagaaaagaagttgtcacaaaagttgtctcaaatggatgttcaaatatcactactca 40610412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 5304757 - 5304719
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  5304757 caaaaattgtatgaaatggttgttcaaatatcactactc 5304719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 28716284 - 28716325
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  28716284 tcacaaaagttgtctcaaatggttgttcaaatatcactactc 28716325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 49453618 - 49453659
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  49453618 tcacaaaagttgtatcaaatagttgttcaaatatcactactc 49453659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2257723 - 2257688
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  2257723 caactttctctctcatactcacatgatgttattatc 2257688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 4638069 - 4638108
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  4638069 caaaagttgtatgaaatggttgttcaaatatcactactca 4638108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5383801 - 5383836
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttatc 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5383801 caactttttctctcatactcacatgatgttgttatc 5383836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 7645480 - 7645441
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactcat 143  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  7645480 aaaaattgtctcaaatggatgttcaaatatcactactcat 7645441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 18959148 - 18959187
Alignment:
Q  103 caaaaattgtatcaaatggttgttc-aaatatcactactc 141  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  18959148 caaaaattgtatcaaatggttgttcaaaatatcactactc 18959187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 51703045 - 51703002
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatatcactact 140  Q
    ||||||||||| |||| | |||||||||||||||||||||||||    
T  51703045 ttatcacaaaagttgtctgaaatggttgttcaaatatcactact 51703002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 8391266 - 8391228
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  8391266 caaaaattgtatgaaatggttgttcagatatcactactc 8391228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 31480061 - 31480023
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  31480061 caaaaattgtatgaaatagttgttcaaatatcactactc 31480023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 43196114 - 43196084
Alignment:
Q  5 tttctctctcatactcacatgatgttgttat 35  Q
    |||||||||||||||||||||||||||||||    
T  43196114 tttctctctcatactcacatgatgttgttat 43196084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 48872878 - 48872840
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  48872878 caaaagttgtatgaaatggttgttcaaatatcactactc 48872840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 49425880 - 49425918
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  49425880 caaaagttgtatgaaatggttgttcaaatatcactactc 49425918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 19651453 - 19651486
Alignment:
Q  2 aactttctctctcatactcacatgatgttgttat 35  Q
    ||||||||||||||||||||||||||||| ||||    
T  19651453 aactttctctctcatactcacatgatgttcttat 19651486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 37843365 - 37843324
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  37843365 tcacacaaattatatcaaatagttgttcaaatatcactactc 37843324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 47187618 - 47187573
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatatcactactca 142  Q
    |||||||||||||||| | |||||||||| ||||||||||| ||||    
T  47187618 ttatcacaaaaattgtttaaaatggttgtccaaatatcactgctca 47187573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 51571567 - 51571608
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| |||||| ||||||||||||||||||||| ||||    
T  51571567 tcacaaaagttgtattaaatggttgttcaaatatcacaactc 51571608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 12708258 - 12708290
Alignment:
Q  121 gttgttcaaatatcactactcattttaaaatag 153  Q
    ||||| |||||||||||||||||||||||||||    
T  12708258 gttgtacaaatatcactactcattttaaaatag 12708290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 12717803 - 12717835
Alignment:
Q  121 gttgttcaaatatcactactcattttaaaatag 153  Q
    ||||| |||||||||||||||||||||||||||    
T  12717803 gttgtacaaatatcactactcattttaaaatag 12717835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 27687455 - 27687415
Alignment:
Q  97 ttatcacaaaaattgtatcaaatggttgttcaaatatcact 137  Q
    ||||||||||| ||||||||||  |||||||||||||||||    
T  27687455 ttatcacaaaagttgtatcaaacagttgttcaaatatcact 27687415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 37516059 - 37516095
Alignment:
Q  107 aattgtatcaaatggttgttcaaatatcactactcat 143  Q
    |||||| |||| |||||||||||||||||||||||||    
T  37516059 aattgtctcaagtggttgttcaaatatcactactcat 37516095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 36142 - 36184
Alignment:
Q  100 tcacaaaaa-ttgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  36142 tcacaaaaagttgtatcaaatggttgttcaaatatcactactc 36184  T

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Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 27485 - 27522
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  27485 aaaaattgtatgaaatggttgttcaaatatcactactc 27522  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 396007 - 396044
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  396007 aaaaattgtatgaaatggttgttcaaatatcactactc 396044  T

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Target: scaffold0449 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 7976 - 8019
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactcatttta 147  Q
    ||||||||||||||||  |||||||||||||||||||| |||||    
T  7976 aaaaattgtatcaaataattgttcaaatatcactactcttttta 8019  T

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Target: scaffold0172 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17017 - 17051
Alignment:
Q  1 caactttctctctcatactcacatgatgttgttat 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  17017 caactttctctctcatactcacatgatgttattat 17051  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 6961 - 6999
Alignment:
Q  103 caaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  6961 caaaagttgtataaaatggttgttcaaatatcactactc 6999  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 15119 - 15078
Alignment:
Q  100 tcacaaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||||||| ||||| ||||| |||||||||||||||||||||    
T  15119 tcacaaaagttgtaccaaatagttgttcaaatatcactactc 15078  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 18148 - 18185
Alignment:
Q  104 aaaaattgtatcaaatggttgttcaaatatcactactc 141  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  18148 aaaagttgtatcaaatagttgttcaaatatcactactc 18185  T

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