View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15554_low_12 (Length: 553)

Name: NF15554_low_12
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15554_low_12
NF15554_low_12
[»] chr4 (13 HSPs)
chr4 (1-534)||(4121581-4122114)
chr4 (168-252)||(18151792-18151876)
chr4 (74-165)||(4347133-4347224)
chr4 (65-165)||(4118662-4118762)
chr4 (74-165)||(4363559-4363650)
chr4 (102-157)||(4131534-4131589)
chr4 (316-420)||(4118839-4118943)
chr4 (337-417)||(4363438-4363518)
chr4 (252-302)||(4337985-4338035)
chr4 (455-516)||(4337668-4337729)
chr4 (251-303)||(4118763-4118815)
chr4 (255-295)||(4363514-4363554)
chr4 (425-484)||(4119009-4119071)
[»] chr3 (2 HSPs)
chr3 (168-252)||(28372514-28372598)
chr3 (168-252)||(28380336-28380420)


Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 4121581 - 4122114
Alignment:
Q  1 ttgcagtcggcaggatgctcttgtgctcaacatcaagggtacaaactctcaaacagttctagagcttacccccagaaagagaaatcccctacattagcca 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4121581 ttgcagtcggcaggatgctcttatgctcaacatcaagggtacaaactctcaaacagttctagagcttacccccagaaagagaaatctcctacattagcca 4121680  T
Q  101 acaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatcaaataaccgtcgaggtgatgtcttgacctaaaaga 200  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4121681 acaaaaccaaaatccacaaatctaaaatagaaatgaaaagaatgacaattctcaatgcaagcatcaaataaccgtcgaggtgacgtcttgacctaaaaga 4121780  T
Q  201 tcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatattggcacaccaatgaaaaatatgcatgctaaacaaaataattcttcattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4121781 tcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatattggcataccaatgaaaaatatgcatgctaaacaaaataattcttcattc 4121880  T
Q  301 ttacttcttagatattataacatgatactgcagttcttctttcctggcatttatttactcaatgcaatactcatgtctcctacattgtaggagctcatag 400  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121881 ttacttcttagatagtataacatgatactgcagttcttctttcctggcatttatttactcaatgcaatactcatgtctcctacattgtaggagctcatag 4121980  T
Q  401 taaaaatgagaaaatgcttattttagaaatgcctttcttttatgagtactggtatccaaattgaatgttaaaacatttttaaagcagtaattaaaaaatt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121981 taaaaatgagaaaatgcttattttagaaatgcctttcttttatgagtactggtatccaaattgaatgttaaaacatttttaaagcagtaattaaaaaatt 4122080  T
Q  501 agataaccaaaaaatacatattttgtgaggaccg 534  Q
    ||||||| ||||||||||||||||||||||||||    
T  4122081 agataactaaaaaatacatattttgtgaggaccg 4122114  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 18151876 - 18151792
Alignment:
Q  168 ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatatt 252  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18151876 ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgaggatatt 18151792  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 4347224 - 4347133
Alignment:
Q  74 agaaagagaaatcccctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc 165  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  4347224 agaaagagaaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatc 4347133  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 4118662 - 4118762
Alignment:
Q  65 cttacccccagaaagagaaatcccctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcat 164  Q
    ||||| |||||||||||||||| |||||| |  |||||||||| |||||||| |||| ||||||||||| ||||||| |||||| ||| |||||||||||    
T  4118662 cttacacccagaaagagaaatctcctacactgcccaacaaaactaaattccataaataaaaaatagaaaggaaaagagtgacaaatcttaatgcaagcat 4118761  T
Q  165 c 165  Q
    |    
T  4118762 c 4118762  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 4363650 - 4363559
Alignment:
Q  74 agaaagagaaatcccctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc 165  Q
    |||||| |||||| ||||||  ||||| |||||||||||  ||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  4363650 agaaagggaaatctcctacaccagccagcaaaaccaaatcacaccaatcataaatagaaaggaaaagaatgacaattctcaatgcaagcatc 4363559  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 4131534 - 4131589
Alignment:
Q  102 caaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatg 157  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  4131534 caaaaccaaattccaccaatcaaaaatagaaaggaaaagaatgacaattctcaatg 4131589  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 420
Target Start/End: Original strand, 4118839 - 4118943
Alignment:
Q  316 tataacatgatactgcagttcttctttcctggcatttatttactcaatgcaatactcatgtctcctacattgtaggagctcatagtaaaaatgagaaaat 415  Q
    ||||| ||| ||||||||||||||| ||||| || ||||||||| ||||   |||| |||||||||||| || |||| || ||||| |||||||||||||    
T  4118839 tataatatgttactgcagttcttctatcctgccacttatttacttaatgtggtactgatgtctcctacactgcaggaactaatagttaaaatgagaaaat 4118938  T
Q  416 gctta 420  Q
    |||||    
T  4118939 gctta 4118943  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 417
Target Start/End: Complemental strand, 4363518 - 4363438
Alignment:
Q  337 ttctttcctggcatttatttactcaatgcaatactcatgtctcctacattgtaggagctcatagtaaaaatgagaaaatgc 417  Q
    |||||||||| |||||||||||| ||||||||| |  ||||||||||||   ||||||||||||| |||||||| ||||||    
T  4363518 ttctttcctgacatttatttacttaatgcaatattgttgtctcctacatcaaaggagctcatagttaaaatgaggaaatgc 4363438  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 4338035 - 4337985
Alignment:
Q  252 tggcacaccaatgaaaaatatgcatgctaaacaaaataattcttcattctt 302  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  4338035 tggcacaccgataaaaaatatgcatgttaaacaaaataattcttcattctt 4337985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 516
Target Start/End: Complemental strand, 4337729 - 4337668
Alignment:
Q  455 tccaaattgaatgttaaaacatttttaaagcagtaattaaaaaattagataaccaaaaaata 516  Q
    ||||||||||||||| ||||| |||||||||| ||| |||| ||||||||||| ||| ||||    
T  4337729 tccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataactaaacaata 4337668  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 4118763 - 4118815
Alignment:
Q  251 ttggcacaccaatgaaaaatatgcatgctaaacaaaataattcttcattctta 303  Q
    |||||||| |||| |||||||||||||||||| ||||||| | ||||||||||    
T  4118763 ttggcacatcaataaaaaatatgcatgctaaataaaataacttttcattctta 4118815  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 4363554 - 4363514
Alignment:
Q  255 cacaccaatgaaaaatatgcatgctaaacaaaataattctt 295  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  4363554 cacaccaatgaaaaagatgcatgctaaacaaaatagttctt 4363514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 484
Target Start/End: Original strand, 4119009 - 4119071
Alignment:
Q  425 agaaatgcctttcttttatgagtactgg----tatccaaattgaatgttaaaacatttttaaag 484  Q
    |||||||||||||||||||||| |||||    ||||||||||||||| | ||||||||||||||    
T  4119009 agaaatgcctttcttttatgagcactggtatatatccaaattgaatg-tcaaacatttttaaag 4119071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 28372514 - 28372598
Alignment:
Q  168 ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatatt 252  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28372514 ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgaggatatt 28372598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 28380336 - 28380420
Alignment:
Q  168 ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatatt 252  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28380336 ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgaggatatt 28380420  T

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