View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_low_18 (Length: 461)
Name: NF15554_low_18
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 45283914 - 45283500
Alignment:
| Q |
19 |
cagagagagtctcaagaaagtcaaaaccccaaaatctccagcttataatctggaaacatatacattgatttaatgcacattttgtacaacctctaaatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283914 |
cagagagagtctcaagaaagtcaaaaccccaaaatcgccagcttataatctggaaacatatacattgatttaatgcacattttgtacaacctctaaatca |
45283815 |
T |
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| Q |
119 |
ctaaccccatatttgactttaaacatatctatctatcnnnnnnnaaaaactcatatagacggtaatttatgattagtagacggtataaaaagttgtacgc |
218 |
Q |
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|||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283814 |
ctaacc--atatttgactttaaagatatctatctatctt-----aaaaactcatata--cggtaatttatgattagtagacggtataaaaagttgtacgc |
45283724 |
T |
|
| Q |
219 |
ccacggtgcatgaaaattaatctctatatacatatgccattaaatatgaactcaatttaacttaactttaatcatgtctatattcacatgcagatgcata |
318 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283723 |
ccacggtgcatgaaaattaatctctatatacat--ggcattaaatatgaactcaatttaacttaactttaatcatgtctatattcacatgcagatgcata |
45283626 |
T |
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| Q |
319 |
aaagttagttacagttgtagaaagtaaaagaaatttaatattagaggcaatatagatagatacatacatacatcatacctgtagttaagttgggaagaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283625 |
aaagttagttacagttgtagaaagtaaaagaaatttaatattagaggcaatatagatagatacatacatacatcatacctgtagttaagttgggaagaaa |
45283526 |
T |
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| Q |
419 |
agaaaataatgaatggagacaaaaac |
444 |
Q |
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|||||||||||||||||||||||||| |
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| T |
45283525 |
agaaaataatgaatggagacaaaaac |
45283500 |
T |
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