View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_low_19 (Length: 445)
Name: NF15554_low_19
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 31484397 - 31484817
Alignment:
| Q |
17 |
aggttggttgtccaattcctcccacttctacaccttggagacaacactgtcaagatgatgcataaaatttgcctgctaa--atatatcagtcaaattgtt |
114 |
Q |
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| T |
31484397 |
aggttggttgtccaattcctcccacttctacaccttggagacaacactgtcaagatgatgcataaaatttgcctgctaattatatatcaatcaaattgtt |
31484496 |
T |
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| Q |
115 |
gactataataaactatgtcgggtgatgggttatgatgttaggagataaccaagatttgtacattgtttggagagaccaatccttacttgtaggattaaca |
214 |
Q |
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| T |
31484497 |
gactataataaactatgtcgggtgacgggttatgatgttaggagataatcaagatttgtacattgtttggagagaccaatccttacttgtaggattaaca |
31484596 |
T |
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| Q |
215 |
c-tttttataggattcttttgatcactctattacatagttcaacttgaccgttggtttaagggtgataagcagtaacaactttgtgtataaccctatatt |
313 |
Q |
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| T |
31484597 |
cctttttataggattcttttgatcactctattacatagttcaacttgaccgttggtttaagggtgataagcagtaacaactctgtgtataaccctatatt |
31484696 |
T |
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| Q |
314 |
cagtcaataagttatctcatatacttcccatacatcgatataaaacaaaatcattttcattatttgttagtctataagtgattatatttactacaagtgg |
413 |
Q |
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| T |
31484697 |
cagtcaataagttatctcatatacttcccatacatcgatataaaacaaaatcattttcattatttgttagaatataagtgattatatttactacaagtgg |
31484796 |
T |
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| Q |
414 |
ttcctttatttatgtccctat |
434 |
Q |
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| T |
31484797 |
ttcctttatttatgtccctat |
31484817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 16668472 - 16668571
Alignment:
| Q |
53 |
ggagacaacactgtcaagatgatgcataaaatttgcctgctaaatatatcagtcaaattgttgactataataaactatgtcgggtgatgggttatgatgt |
152 |
Q |
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| T |
16668472 |
ggagacaacattgtcgagatgatgcaaaaagttgacctgatagatatattagtcaaataactgactataacgaactatgtcgggtggcgggttataatgt |
16668571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 20116703 - 20116765
Alignment:
| Q |
22 |
ggttgtccaattcctcccacttctacaccttggagacaacactgtcaagatgatgcataaaat |
84 |
Q |
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| T |
20116703 |
ggttgtccaatttcgctcacttctgcgccatggagacaacacagtcaagatgatgcaaaaaat |
20116765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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