View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_low_21 (Length: 428)
Name: NF15554_low_21
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 5303900 - 5304298
Alignment:
| Q |
17 |
aaaagaaagttccacgaagcatatgagttttatgtgctacaacagaaatgaccactgcagaatgggaactatgatgatgaggaccaatataaaattcctt |
116 |
Q |
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| T |
5303900 |
aaaagaaagttccacgaagcatatgagttttatgtgctacaacagaaataacccctgcagaatgggaactatgatgatgaggaccaatataaaattcctt |
5303999 |
T |
|
| Q |
117 |
ccctttgtaaagacttgtagctaatgctccaccaacacacaaaattgccccaatacccttagctctaccaacccatgttctaatactcaaattctccatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5304000 |
ccctttgtaaagacttgtagctaatgctccaccaacacacaaaattgccccaatacccttagctctaccaacccatgttctaatactcaaattctccatt |
5304099 |
T |
|
| Q |
217 |
ctgcagtagtagtcattcacaaatttatacatactagtatatggtagtttaatttgtttatgtagctaaatttaatgtgtctttaattaatttggatacc |
316 |
Q |
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| T |
5304100 |
ctgcagtagtagtcattcacaaatttatacatactagtatatggtagtttaatttgtttatgtagctaaatttaatgtgtctttaactaatttggatacc |
5304199 |
T |
|
| Q |
317 |
tgcatatgatagaagtcaagaaggtgcaaatgggaaccaagttgagaaagttgacagcataagtagcagatgtgtctcggagaccataatagaataatc |
415 |
Q |
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| T |
5304200 |
tgcatatgatagaagtcaagaaggtgcaaatgggaaccaagttgagaaagttgacagcataagtagcagatgtgtctcggagaccataatagaataatc |
5304298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 87 - 413
Target Start/End: Original strand, 29224286 - 29224593
Alignment:
| Q |
87 |
atgatgatgaggaccaatataaaattccttccctttgtaaagacttgtagctaatgctccaccaacacacaaaattgccccaatacccttagctctacca |
186 |
Q |
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| T |
29224286 |
atgatgatgatgaccaatataaaattccttccctttgtaaagactcgttgctaatgctccaccaacacacataatagctcctatacacttggctctacca |
29224385 |
T |
|
| Q |
187 |
acccatgttctaatactcaaattctccattctgcagtagtagtcattcacaaatttatacatactagtatatggtagtttaatttgtttatgtagctaaa |
286 |
Q |
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| T |
29224386 |
ccccatgttccaatcttcaaattctccattctgcaattgcactcatccaaaaatttata--------tatttggaagattaatttatttatgtagttaaa |
29224477 |
T |
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| Q |
287 |
tttaatgtgtctttaattaatttggatacctgcatatgatagaagtcaagaaggtgcaaatgggaaccaagttgagaaagttgacagcataagtagcaga |
386 |
Q |
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|| ||||| || ||||||||||||||||||||| ||||| || | || ||||||||||||||||||||||| | ||||||||||| |
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| T |
29224478 |
-----------ttaaattagattatatacctgcatatgatagaagttaagaatgtcaatataggaaccaagttgagaaagttgacggaataagtagcagt |
29224566 |
T |
|
| Q |
387 |
tgtgtctcggagaccataatagaataa |
413 |
Q |
| |
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| T |
29224567 |
tgtgtctcgaagaccgtaatagaataa |
29224593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 87 - 413
Target Start/End: Complemental strand, 29147401 - 29147062
Alignment:
| Q |
87 |
atgatgatgaggaccaatataaaattccttccctttgtaaagacttgtagctaatgctccaccaacacacaaaattgccccaatacccttagctctacca |
186 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||| || || |||| ||| ||||||||| |
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| T |
29147401 |
atgatgatgatgaccaatataaaattccttccctttgtaaagactcgttgctaatgctccaccaacacacataatagctcctatacacttggctctacca |
29147302 |
T |
|
| Q |
187 |
acccatgttctaatactcaaattctccattctgcagtagtagtcattcacaaatttatacat---------act-agtatatggtagtttaatttgttt- |
275 |
Q |
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| T |
29147301 |
ccccatgttccaatcttcaaattctccattctgtagtaatttttattcagaattttatgtatctatctatgactctatatatgtcagattagtttattta |
29147202 |
T |
|
| Q |
276 |
--atgtagctaaatttaatgtgtctttaattaatttggatacctgcatatgatagaagtcaagaaggtgcaaatgggaaccaagttgagaaagttgacag |
373 |
Q |
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||||| ||||||| ||| | |||| || |||||| |||||||| |||| ||||| || ||||| |||||||| || |||||||||||||| ||||| | |
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| T |
29147201 |
ttatgtaactaaattaaatttatcttaaagtaatttagatacctgaatattatagaggttaagaatgtgcaaataggtaccaagttgagaaaattgactg |
29147102 |
T |
|
| Q |
374 |
cataagtagcagatgtgtctcggagaccataatagaataa |
413 |
Q |
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| T |
29147101 |
aataagcagcagttgtgtctcgaagaccataatagaataa |
29147062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 38851889 - 38852015
Alignment:
| Q |
101 |
caatataaaattccttccctttgtaaagacttgtagctaatgctccaccaacacacaaaattgccccaatacccttagctctaccaacccatgttctaat |
200 |
Q |
| |
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|||| ||||| ||||| |||||||| || |||| |||||||| |||| ||||||||||||||||||| | || ||||||||||||| |||||| ||| |
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| T |
38851889 |
caatgtaaaactcctttcctttgtatagtcttgcagctaatgttccagcaacacacaaaattgccccgacacacttagctctaccattccatgtgtgaat |
38851988 |
T |
|
| Q |
201 |
actcaaattctccattctgcagtagta |
227 |
Q |
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||||||||||||||||||| ||||| |
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| T |
38851989 |
gttcaaattctccattctgcaatagta |
38852015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 38852097 - 38852170
Alignment:
| Q |
331 |
gtcaagaaggtgcaaatgggaaccaagttgagaaagttgacagcataagtagcagatgtgtctcggagaccata |
404 |
Q |
| |
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|||||||| ||||| || |||| ||||||||||| |||| |||||| || |||||||||||||| | |||||| |
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| T |
38852097 |
gtcaagaatgtgcagataggaattaagttgagaaaattgagagcatatgtggcagatgtgtctcgaataccata |
38852170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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