View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15554_low_25 (Length: 372)

Name: NF15554_low_25
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15554_low_25
NF15554_low_25
[»] chr1 (1 HSPs)
chr1 (6-360)||(46214945-46215299)
[»] chr3 (1 HSPs)
chr3 (9-136)||(366714-366841)
[»] chr6 (1 HSPs)
chr6 (124-216)||(18202973-18203065)
[»] chr8 (1 HSPs)
chr8 (81-135)||(7523866-7523920)
[»] chr5 (2 HSPs)
chr5 (7-43)||(3215775-3215811)
chr5 (7-43)||(3219281-3219317)
[»] chr4 (3 HSPs)
chr4 (13-61)||(42742403-42742451)
chr4 (13-61)||(42751762-42751810)
chr4 (13-61)||(42761224-42761272)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 46215299 - 46214945
Alignment:
Q  6 acataagctgttgtcatgattgctgattttatagcagctgaactccattcaggatgtttagctttgatcatagccgcgattccacttacatgaggacatg 105  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215299 acataagctgttgtcatgattgctgattttatagcagctggactccattcaggatgtttagctttgatcatagccgcgattccacttacatgaggacatg 46215200  T
Q  106 acatcgaagttccggaaagtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcac 205  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215199 acatcgaagttccggagagtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcac 46215100  T
Q  206 accaggtgctactatatcaggttttagaatttcaagtgtgagtaaacttggccctcttgatgaaaatgctgctactataggagatggtctaattcctaat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215099 accaggtgctactatatcaggttttagaatttcaagtgtgagtaaacttggccctcttgatgaaaatgctgctactataggagatggtctaattcctaat 46215000  T
Q  306 cttgtgttatgaaaagctaatgtagctgtagcttttttagttgttaacacatatt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46214999 cttgtgttatgaaaagctaatgtagctgtagcttttttagttgttaacacatatt 46214945  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 366714 - 366841
Alignment:
Q  9 taagctgttgtcatgattgctgattttatagcagctgaactccattcaggatgtttagctttgatcatagccgcgattccacttacatgaggacatgaca 108  Q
    |||| |||||||||||||   |||||||||| ||||| ||||||||| | ||||||||||||||||||   |||||||||||||||||||||||||||||    
T  366714 taagttgttgtcatgattaaagattttatagtagctggactccattcggtatgtttagctttgatcattttcgcgattccacttacatgaggacatgaca 366813  T
Q  109 tcgaagttccggaaagtatgttaaactt 136  Q
    | |||||||||||||  |||||||||||    
T  366814 ttgaagttccggaaaacatgttaaactt 366841  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 18203065 - 18202973
Alignment:
Q  124 gtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgcta 216  Q
    ||||||||||||| |  ||| |||||| | || ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  18203065 gtatgttaaacttcattcttttatgatatgttagtaaacttgatggaccattaagtccactccaaactgcaagaatgttcacaccaggtgcta 18202973  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 7523866 - 7523920
Alignment:
Q  81 gcgattccacttacatgaggacatgacatcgaagttccggaaagtatgttaaact 135  Q
    ||||||||||| ||||||||||||||||| ||||| || |||| |||||||||||    
T  7523866 gcgattccactaacatgaggacatgacatagaagtacctgaaattatgttaaact 7523920  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 3215775 - 3215811
Alignment:
Q  7 cataagctgttgtcatgattgctgattttatagcagc 43  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3215775 cataagcagttgtcatgattgctgattttatagcagc 3215811  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 3219281 - 3219317
Alignment:
Q  7 cataagctgttgtcatgattgctgattttatagcagc 43  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3219281 cataagcagttgtcatgattgctgattttatagcagc 3219317  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 42742403 - 42742451
Alignment:
Q  13 ctgttgtcatgattgctgattttatagcagctgaactccattcaggatg 61  Q
    |||| |||||||||||||| || |||||||||| |||||| ||||||||    
T  42742403 ctgtagtcatgattgctgacttgatagcagctggactccaatcaggatg 42742451  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 42751762 - 42751810
Alignment:
Q  13 ctgttgtcatgattgctgattttatagcagctgaactccattcaggatg 61  Q
    |||| |||||||||||||| || |||||||||| |||||| ||||||||    
T  42751762 ctgtagtcatgattgctgacttgatagcagctggactccaatcaggatg 42751810  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 42761224 - 42761272
Alignment:
Q  13 ctgttgtcatgattgctgattttatagcagctgaactccattcaggatg 61  Q
    |||| |||||||||||||| || |||||||||| |||||| ||||||||    
T  42761224 ctgtagtcatgattgctgacttgatagcagctggactccaatcaggatg 42761272  T

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