View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15554_low_30 (Length: 315)

Name: NF15554_low_30
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15554_low_30
NF15554_low_30
[»] chr6 (9 HSPs)
chr6 (1-298)||(24587504-24587802)
chr6 (1-55)||(12343143-12343197)
chr6 (3-55)||(13043502-13043554)
chr6 (1-55)||(10521890-10521944)
chr6 (1-55)||(24618642-24618696)
chr6 (1-55)||(551206-551260)
chr6 (1-55)||(17750945-17750999)
chr6 (1-38)||(31654348-31654385)
chr6 (11-55)||(2315345-2315389)
[»] chr3 (17 HSPs)
chr3 (1-55)||(47492088-47492142)
chr3 (1-55)||(30476515-30476569)
chr3 (1-55)||(33689219-33689273)
chr3 (1-55)||(29031755-29031809)
chr3 (1-55)||(47677296-47677350)
chr3 (1-55)||(43139750-43139804)
chr3 (1-55)||(1801487-1801541)
chr3 (1-55)||(18321694-18321748)
chr3 (1-55)||(30734443-30734497)
chr3 (3-55)||(50524747-50524799)
chr3 (1-55)||(41753007-41753061)
chr3 (1-51)||(51046118-51046168)
chr3 (1-51)||(30580801-30580851)
chr3 (9-51)||(50550026-50550068)
chr3 (3-55)||(30904289-30904341)
chr3 (11-55)||(49418732-49418776)
chr3 (19-51)||(55223293-55223325)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-55)||(7088-7142)
[»] chr5 (18 HSPs)
chr5 (1-55)||(16439181-16439235)
chr5 (1-55)||(3899882-3899936)
chr5 (1-55)||(16971187-16971241)
chr5 (1-55)||(29699410-29699464)
chr5 (7-55)||(2953239-2953287)
chr5 (1-55)||(19655201-19655255)
chr5 (1-55)||(26662442-26662496)
chr5 (1-55)||(26934037-26934091)
chr5 (1-55)||(38134414-38134468)
chr5 (3-55)||(30117869-30117921)
chr5 (1-51)||(3180105-3180155)
chr5 (1-55)||(12913846-12913900)
chr5 (1-51)||(28818960-28819010)
chr5 (11-55)||(2093978-2094022)
chr5 (1-55)||(291140-291194)
chr5 (8-43)||(19598382-19598417)
chr5 (1-55)||(2935871-2935925)
chr5 (1-51)||(16802487-16802537)
[»] chr2 (15 HSPs)
chr2 (1-55)||(14229394-14229448)
chr2 (1-55)||(2828627-2828681)
chr2 (1-55)||(6721994-6722048)
chr2 (1-55)||(15011323-15011377)
chr2 (1-51)||(38933630-38933680)
chr2 (11-55)||(16514477-16514521)
chr2 (1-55)||(2894006-2894060)
chr2 (1-55)||(6217265-6217319)
chr2 (1-55)||(14470633-14470687)
chr2 (1-55)||(29925611-29925665)
chr2 (1-55)||(37762042-37762096)
chr2 (1-51)||(29508736-29508786)
chr2 (1-55)||(37961749-37961803)
chr2 (1-55)||(24115963-24116017)
chr2 (16-53)||(8534204-8534241)
[»] chr1 (29 HSPs)
chr1 (1-55)||(741543-741597)
chr1 (3-55)||(17127605-17127657)
chr1 (1-55)||(1091585-1091639)
chr1 (1-55)||(4609039-4609093)
chr1 (1-55)||(29179638-29179692)
chr1 (1-55)||(29371411-29371465)
chr1 (1-55)||(32540789-32540843)
chr1 (1-55)||(37155089-37155143)
chr1 (1-55)||(46333987-46334041)
chr1 (1-55)||(48993958-48994012)
chr1 (1-55)||(5995412-5995466)
chr1 (1-55)||(9157353-9157407)
chr1 (1-55)||(45728330-45728384)
chr1 (3-55)||(38674546-38674596)
chr1 (7-55)||(15220860-15220908)
chr1 (12-55)||(1819530-1819573)
chr1 (1-55)||(8337892-8337946)
chr1 (1-55)||(33219616-33219670)
chr1 (1-55)||(34062252-34062306)
chr1 (1-55)||(47303438-47303492)
chr1 (3-55)||(48604988-48605040)
chr1 (1-47)||(36290456-36290502)
chr1 (1-51)||(44706829-44706879)
chr1 (7-55)||(28928820-28928868)
chr1 (8-55)||(48498465-48498512)
chr1 (1-55)||(49444954-49445006)
chr1 (1-43)||(5694942-5694984)
chr1 (1-34)||(21630085-21630118)
chr1 (1-29)||(28395680-28395708)
[»] chr8 (15 HSPs)
chr8 (1-55)||(5033204-5033258)
chr8 (1-55)||(35441010-35441064)
chr8 (1-55)||(8243429-8243483)
chr8 (1-51)||(8796465-8796515)
chr8 (1-55)||(34229684-34229738)
chr8 (1-53)||(5667140-5667192)
chr8 (3-55)||(33841632-33841684)
chr8 (1-51)||(6296648-6296698)
chr8 (1-55)||(10086800-10086854)
chr8 (3-47)||(34541852-34541896)
chr8 (3-55)||(45191168-45191220)
chr8 (1-48)||(4958642-4958689)
chr8 (1-43)||(39850998-39851040)
chr8 (19-51)||(31159912-31159944)
chr8 (1-29)||(43844536-43844564)
[»] chr4 (21 HSPs)
chr4 (1-55)||(6271745-6271799)
chr4 (1-55)||(23444310-23444364)
chr4 (1-55)||(40789222-40789276)
chr4 (1-55)||(42375053-42375107)
chr4 (1-55)||(47661885-47661939)
chr4 (1-55)||(55090037-55090091)
chr4 (7-55)||(50384146-50384194)
chr4 (4-55)||(52028595-52028646)
chr4 (1-55)||(47404626-47404680)
chr4 (1-51)||(51265488-51265538)
chr4 (1-53)||(53954653-53954705)
chr4 (1-55)||(26186057-26186109)
chr4 (1-47)||(30861823-30861869)
chr4 (1-55)||(35682209-35682263)
chr4 (7-55)||(25818414-25818462)
chr4 (7-51)||(45591455-45591499)
chr4 (1-51)||(47762651-47762701)
chr4 (7-55)||(24006111-24006159)
chr4 (16-55)||(31430502-31430541)
chr4 (11-55)||(28693964-28694008)
chr4 (3-55)||(44379975-44380027)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-55)||(63800-63854)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-55)||(49744-49798)
[»] chr7 (14 HSPs)
chr7 (1-55)||(11016912-11016966)
chr7 (1-55)||(27028834-27028888)
chr7 (8-55)||(15027592-15027639)
chr7 (1-55)||(4290588-4290642)
chr7 (1-55)||(7671952-7672006)
chr7 (1-51)||(38975848-38975898)
chr7 (1-55)||(41018269-41018323)
chr7 (1-55)||(42628338-42628392)
chr7 (1-43)||(22764753-22764795)
chr7 (1-55)||(29053355-29053409)
chr7 (1-55)||(34854736-34854790)
chr7 (3-55)||(10419503-10419555)
chr7 (1-55)||(48000780-48000834)
chr7 (9-55)||(4649371-4649419)
[»] scaffold1033 (1 HSPs)
scaffold1033 (10-55)||(2265-2310)
[»] scaffold1029 (1 HSPs)
scaffold1029 (10-55)||(2265-2310)
[»] scaffold0481 (1 HSPs)
scaffold0481 (9-55)||(2928-2974)
[»] scaffold0161 (1 HSPs)
scaffold0161 (1-55)||(27261-27315)
[»] scaffold0180 (1 HSPs)
scaffold0180 (11-55)||(19163-19207)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 24587504 - 24587802
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtgaacacatggtccttcatgnnnnnnnttatcgtacggtacgttcttt 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||||||||    
T  24587504 acaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtgacattgtgaacacatggtccttaatgaaaaaa-ttatcgtacggtacgttcttt 24587602  T
Q  101 aggaaacacatgttgatgttgcggtacatgttcctcttgatgcacatgatacagtggcagat--gttcttgttcaaccttccattgttgttattgctgaa 198  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||  |||||||    
T  24587603 aggaaacacatgctgatgttgcggtacatgttcctcttgatgcacatgatccagtggcagatctgttcttgttcaaccttccattgttgttgctgctgaa 24587702  T
Q  199 actctttctctagctatggatactgctcaatcatttcttggtgcgaccctaaaataattcattgcgctaaagtatgggtcttacaccttgtgtatggcct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24587703 actctttctctagctatggatactgctcaatcatttcttggtgcgaccctaaaataattcattgcgctaaagtatgggtcttacaccttgtgtatggcct 24587802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12343143 - 12343197
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  12343143 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 12343197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 13043502 - 13043554
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  13043502 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgatattgtga 13043554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10521944 - 10521890
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  10521944 acaatgtcataatgcttgtgtttctctctctttcataagcattgtgacattgtga 10521890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24618696 - 24618642
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  24618696 acaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtga 24618642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 551260 - 551206
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  551260 acaatgccacaatgcttgtgtttctctctctttcacaaacattgtggcattgtga 551206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17750945 - 17750999
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||    
T  17750945 acaatgtcacaatgtttgtatttatctctctttcacaagcattgtgacattgtga 17750999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31654348 - 31654385
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaa 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31654348 acaatgtcacaatgcttgtgtttctctctctttcacaa 31654385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 2315389 - 2315345
Alignment:
Q  11 aatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||| |||||| |||| |||||||| ||||||||||||||||    
T  2315389 aatgcttatgtttcgctctctttcacaaacattgtgacattgtga 2315345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47492142 - 47492088
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47492142 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 47492088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30476569 - 30476515
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30476569 acaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 30476515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33689219 - 33689273
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33689219 acaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 33689273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29031809 - 29031755
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  29031809 acaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 29031755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47677350 - 47677296
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  47677350 acaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 47677296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43139804 - 43139750
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  43139804 acaatgccacaatgcttgtgtttctctctctttcacaagcattctgacattgtga 43139750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1801541 - 1801487
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  1801541 acaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 1801487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18321694 - 18321748
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||| | |||||||| ||||||||||||| |||||||||||||||||    
T  18321694 acaatgtcacaaagtttgtgtttttctctttttcacatgcattgtgacattgtga 18321748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30734497 - 30734443
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||    
T  30734497 acaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtga 30734443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 50524747 - 50524799
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||| |||||||||||||| |||||||||||| || |||||||||    
T  50524747 aatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtga 50524799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41753007 - 41753061
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||| ||| |||||||||||||||| ||||||||    
T  41753007 acaatgccacaatgtttgtgtttctttctctttcacaagcattgtggcattgtga 41753061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 51046168 - 51046118
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    |||||| || ||||||||||||||||||| |||||||| ||||||||||||    
T  51046168 acaatgccataatgcttgtgtttctctctctttcacaaacattgtgacatt 51046118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30580851 - 30580801
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    ||||||||||| ||||||||||||| ||| ||||||||  |||||||||||    
T  30580851 acaatgtcacagtgcttgtgtttctatctctttcacaaatattgtgacatt 30580801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 50550026 - 50550068
Alignment:
Q  9 acaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    ||||||||||||||||||||| |||||||| |||| |||||||    
T  50550026 acaatgcttgtgtttctctctctttcacaaacattatgacatt 50550068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 30904289 - 30904341
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||| ||| | ||  ||||||| |||||||    
T  30904289 aatgtcacaatgcttgtgtttctctctcttttataaatattgtgatattgtga 30904341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 49418776 - 49418732
Alignment:
Q  11 aatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||| ||||||||  ||| |||||||||||    
T  49418776 aatgcttgtgtttctctctctttcacaaatattatgacattgtga 49418732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 55223293 - 55223325
Alignment:
Q  19 tgtttctctctttttcacaagcattgtgacatt 51  Q
    ||||||||||| |||||||||||||||||||||    
T  55223293 tgtttctctctctttcacaagcattgtgacatt 55223325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7142 - 7088
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7142 acaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 7088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16439181 - 16439235
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16439181 acaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 16439235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3899882 - 3899936
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  3899882 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 3899936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16971187 - 16971241
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  16971187 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 16971241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29699410 - 29699464
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  29699410 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 29699464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 2953239 - 2953287
Alignment:
Q  7 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2953239 tcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 2953287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19655201 - 19655255
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  19655201 acaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 19655255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26662442 - 26662496
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  26662442 acaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtga 26662496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26934037 - 26934091
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  26934037 acaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtga 26934091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38134468 - 38134414
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||    
T  38134468 acaatgtcacaatgcttgtgtttctttctctttcactagcattgtgacattgtga 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 30117921 - 30117869
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||| |||||||||||||||||||||||||||| || ||||||||||||||||    
T  30117921 aatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtga 30117869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3180155 - 3180105
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  3180155 acaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacatt 3180105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12913846 - 12913900
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||    
T  12913846 acaatgtcacaattcttgtgtatctctctctttcacaagcattatgacattgtga 12913900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28818960 - 28819010
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  28818960 acaatgtcacaatacttgtatttctctctctttcacaagcattgtgacatt 28819010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 2094022 - 2093978
Alignment:
Q  11 aatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  2094022 aatgcttgtgtttctctctctttcacaagcattatgacattgtga 2093978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 291140 - 291194
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||| ||||| ||| |||||||| ||||||||||||||||    
T  291140 acaatgccacaatgcttgtatttctttctctttcacaaacattgtgacattgtga 291194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 19598382 - 19598417
Alignment:
Q  8 cacaatgcttgtgtttctctctttttcacaagcatt 43  Q
    |||||||||||||||||||||| |||||||||||||    
T  19598382 cacaatgcttgtgtttctctctctttcacaagcatt 19598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2935925 - 2935871
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||||||||||| | ||| |||| |||| |||||||||||    
T  2935925 acaatgtcacaatgtttgtgtttctctatcttttacaaacattatgacattgtga 2935871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 16802487 - 16802537
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    ||||||| |||||  |||||||||||||| ||| |||||||||||||||||    
T  16802487 acaatgtaacaatatttgtgtttctctctcttttacaagcattgtgacatt 16802537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14229448 - 14229394
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14229448 acaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 14229394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2828627 - 2828681
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  2828627 acaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtgacattgtga 2828681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6721994 - 6722048
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  6721994 acaatatcacaatgcttgtgtttctctctctttcacaaacattgtgacattgtga 6722048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15011323 - 15011377
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  15011323 acaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 15011377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38933630 - 38933680
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  38933630 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacatt 38933680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 16514477 - 16514521
Alignment:
Q  11 aatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  16514477 aatgcttgtgtttctctctctttcacaagcattgtgacattgtga 16514521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2894006 - 2894060
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  2894006 acaatctcacaatgcttgtatttctctctctttcacaagcattgtgacactgtga 2894060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6217319 - 6217265
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  6217319 acaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 6217265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14470687 - 14470633
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||  |||||||||    
T  14470687 acaatgtcacaatgtttgtgtttctctctctttcacaagcattgcaacattgtga 14470633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29925665 - 29925611
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  29925665 acaatgccacaatgtttgtgtttctctctctttcacaagcattctgacattgtga 29925611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37762096 - 37762042
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  37762096 acaatatcacaatgcttgtgtttctttctctttcacaagcattgcgacattgtga 37762042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29508786 - 29508736
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    |||||| | |||||||||||||||||||| |||||||||||||||| ||||    
T  29508786 acaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatt 29508736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37961749 - 37961803
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| || |||| |||||||||||||| |||||||||||||||| ||||||||    
T  37961749 acaatgccataatgtttgtgtttctctctctttcacaagcattgtggcattgtga 37961803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24115963 - 24116017
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||| ||||||| |||||||| | || |||||||||||||| ||||||||||    
T  24115963 acaatgttacaatgcctgtgtttcacactctttcacaagcattgcgacattgtga 24116017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8534204 - 8534241
Alignment:
Q  16 ttgtgtttctctctttttcacaagcattgtgacattgt 53  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  8534204 ttgtgtttctctctatttcacaagaattgtgacattgt 8534241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 741597 - 741543
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  741597 acaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 741543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17127657 - 17127605
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17127657 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 17127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1091639 - 1091585
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  1091639 acaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 1091585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4609039 - 4609093
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  4609039 acaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 4609093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29179692 - 29179638
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  29179692 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 29179638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29371411 - 29371465
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  29371411 acaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 29371465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32540843 - 32540789
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  32540843 acaatgttacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 32540789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37155089 - 37155143
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  37155089 acaatgtcacaatgcttgtgtttctctctctttcacaagtattgtgacattgtga 37155143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46334041 - 46333987
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  46334041 acaatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtga 46333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48994012 - 48993958
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  48994012 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 48993958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5995412 - 5995466
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  5995412 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtga 5995466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9157353 - 9157407
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||    
T  9157353 acaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgtga 9157407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45728330 - 45728384
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  45728330 acaatatcacaatgcttgtgtttctctctctttcacaagcattatgacattgtga 45728384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38674596 - 38674546
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  38674596 aatgtcacaatgcttgtgtttctctc--tttcacaagcattgtgacattgtga 38674546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 15220860 - 15220908
Alignment:
Q  7 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  15220860 tcacaatgcttgtgtttctctctctttcacaagcattgtgagattgtga 15220908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 1819573 - 1819530
Alignment:
Q  12 atgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  1819573 atgcttgtgtttctctctctttcacaagcattgtgacattgtga 1819530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8337946 - 8337892
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  8337946 acaatgccacaatgtttgtgtttctctctctttcacaaacattgtgacattgtga 8337892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33219616 - 33219670
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||    
T  33219616 acaatgttacaatgcttgtgtttttctctctttcacaagcattatgacattgtga 33219670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34062252 - 34062306
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  34062252 acaatgccacaatgcttatgtttctctctctttcacaaacattgtgacattgtga 34062306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 47303438 - 47303492
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||    
T  47303438 acaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtga 47303492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 48605040 - 48604988
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||||| |||||||||| ||||||||  |||||||||||||||    
T  48605040 aatgtcacaatgcttgcgtttctctctctttcacaaatattgtgacattgtga 48604988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36290502 - 36290456
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 47  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||    
T  36290502 acaatgtcacaatatttgtgtttctctctctttcacaagcattgtga 36290456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44706879 - 44706829
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    |||||| | |||||||||||||||||||| |||||||||||||||| ||||    
T  44706879 acaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatt 44706829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 28928868 - 28928820
Alignment:
Q  7 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||| || |||||||||||||| ||||||||||| |||||||||||||    
T  28928868 tcacagtgtttgtgtttctctctctttcacaagcactgtgacattgtga 28928820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 48498465 - 48498512
Alignment:
Q  8 cacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||| |||||||||||||| |||||||||||| || |||||||||    
T  48498465 cacaatgtttgtgtttctctctctttcacaagcatggtaacattgtga 48498512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49445006 - 49444954
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||  | ||||||||||||| |||||||||    
T  49445006 acaatgccacaatgcttgtgtttctctc--tctcacaagcattgtaacattgtga 49444954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5694984 - 5694942
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcatt 43  Q
    |||||||||||||  |||||||||||||| |||||||||||||    
T  5694984 acaatgtcacaatatttgtgtttctctctctttcacaagcatt 5694942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21630085 - 21630118
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttc 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  21630085 acaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 28395680 - 28395708
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctct 29  Q
    |||||||||||||||||||||||||||||    
T  28395680 acaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5033204 - 5033258
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  5033204 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 5033258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35441064 - 35441010
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  35441064 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 35441010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8243483 - 8243429
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  8243483 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtga 8243429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8796465 - 8796515
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  8796465 acaatgtcacaatgcttgtgtttctctatctttcacaagcattgtgacatt 8796515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34229684 - 34229738
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  34229684 acaatgtcagaatgcttgtgtttctctctctttcacaagcattgtgatattgtga 34229738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5667140 - 5667192
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgt 53  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  5667140 acaatgtcacaatgcttgtatttctctctctttcacaagcattatgacattgt 5667192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 33841684 - 33841632
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  33841684 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacaatgtga 33841632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6296648 - 6296698
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||||||||    
T  6296648 acaatgtcataatgcttgtgtttctctctctttcacaagtattgtgacatt 6296698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10086800 - 10086854
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||    
T  10086800 acaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtga 10086854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 34541896 - 34541852
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 47  Q
    |||| |||||||||||||||||||||| |||||||||||||||||    
T  34541896 aatgccacaatgcttgtgtttctctctctttcacaagcattgtga 34541852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 45191220 - 45191168
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||| |||||| |||||||||||||| ||||| |||||||||| ||||||||    
T  45191220 aatgttacaatgtttgtgtttctctctctttcataagcattgtggcattgtga 45191168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4958642 - 4958689
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgac 48  Q
    ||||||||| |||| |||||||||||||| ||||||||| ||||||||    
T  4958642 acaatgtcataatgtttgtgtttctctctctttcacaagtattgtgac 4958689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39850998 - 39851040
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcatt 43  Q
    |||||| ||||||| |||||||||||||| |||||||||||||    
T  39850998 acaatgccacaatgtttgtgtttctctctctttcacaagcatt 39851040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 31159912 - 31159944
Alignment:
Q  19 tgtttctctctttttcacaagcattgtgacatt 51  Q
    ||||||||||| |||||||||||||||||||||    
T  31159912 tgtttctctctctttcacaagcattgtgacatt 31159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 43844564 - 43844536
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctct 29  Q
    |||||||||||||||||||||||||||||    
T  43844564 acaatgtcacaatgcttgtgtttctctct 43844536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6271745 - 6271799
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  6271745 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 6271799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23444364 - 23444310
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  23444364 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 23444310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40789222 - 40789276
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  40789222 acaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 40789276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42375053 - 42375107
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  42375053 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 42375107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 47661885 - 47661939
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  47661885 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 47661939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 55090091 - 55090037
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  55090091 acaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtga 55090037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 50384194 - 50384146
Alignment:
Q  7 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50384194 tcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 50384146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 52028595 - 52028646
Alignment:
Q  4 atgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  52028595 atgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 52028646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47404680 - 47404626
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  47404680 acaatgccacaatgcttgggtttctctctctttcacaagcattgtgacattgtga 47404626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 51265488 - 51265538
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  51265488 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacatt 51265538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 53954653 - 53954705
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgt 53  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  53954653 acaatgtcacaatgctagtgtttctcactctttcacaagcattgtgacattgt 53954705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26186109 - 26186057
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  26186109 acaatttcacaatgcttgtgtttctctcttt--cacaagcattgtgacattgtga 26186057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30861869 - 30861823
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtga 47  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||    
T  30861869 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 30861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35682209 - 35682263
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||    
T  35682209 acaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtga 35682263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 25818462 - 25818414
Alignment:
Q  7 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  25818462 tcacaatgattgtgtttctctctctttcacaatcattgtgacattgtga 25818414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 45591499 - 45591455
Alignment:
Q  7 tcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  45591499 tcacaatgtttgtgtttctctctctttcacaagcattgtgacatt 45591455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47762651 - 47762701
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    ||||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  47762651 acaatgttacaatgtttatgtttctctctctttcacaagcattgtgacatt 47762701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 24006159 - 24006111
Alignment:
Q  7 tcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||| || ||||||||||| |||||||||||||||| ||||||||    
T  24006159 tcacaatgtttatgtttctctctctttcacaagcattgtgtcattgtga 24006111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 31430541 - 31430502
Alignment:
Q  16 ttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  31430541 ttgtgtttctctctctttcataagcattgtgacattgtga 31430502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 28694008 - 28693964
Alignment:
Q  11 aatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||| |||||||||||||| |||||||| |||||||| |||||||    
T  28694008 aatgtttgtgtttctctctctttcacaaacattgtgatattgtga 28693964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 44379975 - 44380027
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||||| |||||||||| ||| | ||| ||||| |||||||||    
T  44379975 aatgtcacaatgcttgcgtttctctctattttataagtattgtaacattgtga 44380027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 63800 - 63854
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  63800 acaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 63854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49798 - 49744
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  49798 acaatgccacaatgcttgtgtttctctttctttcacaagcattgtgacattgtga 49744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 11016912 - 11016966
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  11016912 acaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattgtga 11016966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27028888 - 27028834
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  27028888 acaatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtga 27028834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 15027592 - 15027639
Alignment:
Q  8 cacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  15027592 cacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 15027639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4290588 - 4290642
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  4290588 acaatgccacaatgctcgtgtttctctctctttcacaagaattgtgacattgtga 4290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7672006 - 7671952
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  7672006 acaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 7671952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38975848 - 38975898
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacatt 51  Q
    |||||| |||||||||||||||||||||| |||||||||||||||| ||||    
T  38975848 acaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcatt 38975898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41018323 - 41018269
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  41018323 acaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtga 41018269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42628338 - 42628392
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  42628338 acaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtga 42628392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22764795 - 22764753
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcatt 43  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  22764795 acaatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29053409 - 29053355
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| |||||||||||||| | ||||||||    
T  29053409 acaatgccacaatgtttgtgtttctctctctttcacaagcattgaggcattgtga 29053355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34854790 - 34854736
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||| ||| |||||||||||||||| ||||||||    
T  34854790 acaatgccacaatgtttgtgtttctatctctttcacaagcattgtggcattgtga 34854736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 10419503 - 10419555
Alignment:
Q  3 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    ||||| ||||| ||||||||||||||| |||||||||  ||||||||||||||    
T  10419503 aatgttacaatacttgtgtttctctctctttcacaagttttgtgacattgtga 10419555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48000780 - 48000834
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| ||||||| |||||||||||||| |||||||  ||||||| ||||||||    
T  48000780 acaatgccacaatgtttgtgtttctctctctttcacagacattgtggcattgtga 48000834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 4649371 - 4649419
Alignment:
Q  9 acaatgcttgtgtttctctcttt--ttcacaagcattgtgacattgtga 55  Q
    ||||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  4649371 acaatgcttgtgtttctctctctctttcacaagcatcgtgacattgtga 4649419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 2265 - 2310
Alignment:
Q  10 caatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtga 2310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 2265 - 2310
Alignment:
Q  10 caatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtga 2310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 2974 - 2928
Alignment:
Q  9 acaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||    
T  2974 acaatgtttgtgtttctctctctttcacaaacattgtgacattgtga 2928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27315 - 27261
Alignment:
Q  1 acaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||||| |||||||||| ||||||||||| ||||||||| ||| |||||||||||    
T  27315 acaatgccacaatgcttctgtttctctctctttcacaagaattatgacattgtga 27261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 19207 - 19163
Alignment:
Q  11 aatgcttgtgtttctctctttttcacaagcattgtgacattgtga 55  Q
    |||| |||||||||||| | || ||||||||||||||||||||||    
T  19207 aatgtttgtgtttctctttcttccacaagcattgtgacattgtga 19163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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