View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_low_33 (Length: 310)
Name: NF15554_low_33
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 665023 - 664736
Alignment:
| Q |
1 |
acagaagacaaaatagcttaaaatttaccccttcaaaattgtacattctaatatacgtctttgattctgtcatttttcattcactgtgtgtgcattaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
665023 |
acagaagacaaaatagcttaaaatttaccccttcaaaattgtacattctaatatacgtctttgattctgtcatttttcattcactgtgtgtgtattaatt |
664924 |
T |
|
| Q |
101 |
cttgtgcagtggtaacacatcataaactannnnnnnatactctttcaaatacatacatcctgtaatctgtttatgtcatgagataataagtttgcccaaa |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
664923 |
cttgtgcagtggtaacacatcataaactatttttttatactctttcaaatacatacatcctgtaatctgtttatgtcatgagataataagtttgcccaaa |
664824 |
T |
|
| Q |
201 |
cacatgagttcattgagatgcatgaaaattgagagtaaatatgcacaacctataagtcatcacatgctcacagacagaaaagagaaaa |
288 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
664823 |
cacacgagttcattgagatgcataaaaattgagagtaaatatgcacaacctataagtcatcacatgctcacagacagaaaagagaaaa |
664736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 697516 - 697471
Alignment:
| Q |
236 |
taaatatgcacaacctataagtcatcacatgctcacagacagaaaa |
281 |
Q |
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| T |
697516 |
taaatatgcacaagctagaagtcatcacatgctgacagacagaaaa |
697471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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