View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_low_34 (Length: 299)
Name: NF15554_low_34
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 11401247 - 11401511
Alignment:
| Q |
16 |
cacacacaatgcaccactttatataaaaaagttaatataaggattaatctgcacacaatgttactttggagagtaaaagtaaaaacatgatcaaattatc |
115 |
Q |
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| T |
11401247 |
cacacacaatgcaccactttatataaaaaagttaatataaggattaatctgcaaacaatgatactttggagagtaaaagtaaaaacatgatcaaattatc |
11401346 |
T |
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| Q |
116 |
tatgtcataacataaaatctaacaagtagaactcaaacatcaatccttaagatccacactcacacaacatacccccataccttgaagaaacacaaataga |
215 |
Q |
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|||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11401347 |
tatg-cacaacataaaatgtaacaagtagaactcaaacatcaatccttaagatccacactcacacaacatacccccataccttgaagaaacacaaataga |
11401445 |
T |
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| Q |
216 |
aattcaaataaacacataaatcctaatttcacaatgcgaatagtcgatatttatttatttttcttc |
281 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11401446 |
aattcaaatagacacataaatcctaatttcacaatgcgaatagtcgatatttatttatttttcttc |
11401511 |
T |
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