View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_low_36 (Length: 287)
Name: NF15554_low_36
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_36 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 6139591 - 6139792
Alignment:
| Q |
54 |
atattccaatcactccaagtgtaaatttaatattacattgacgaatgaaaaatgaagaataacatatgcgttagttgtattcatataattaaattgttag |
153 |
Q |
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| T |
6139591 |
atattccaatcactccaagtgtaaatttaatattacattgacgaatgaaaaatgaagaataacatatgcgttagttgtattcatataattaagttgttag |
6139690 |
T |
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| Q |
154 |
atttctatatcttctgttgattaattttgcattcatgagtcaaatacgaatttaacatttgggtatgaaatgtatcagatttttaacaccgtacatcatc |
253 |
Q |
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| T |
6139691 |
atttctatatcttctgttgattaattttgcattcatgagtcaaatacgaatttaacatttgggtctgaaatgtatcagatttttaacaccatacatcatc |
6139790 |
T |
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| Q |
254 |
tt |
255 |
Q |
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|| |
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| T |
6139791 |
tt |
6139792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6139515 - 6139571
Alignment:
| Q |
1 |
attttccatgattaattgttagtatttaatttgtaattatatagtgtgttgccatat |
57 |
Q |
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| T |
6139515 |
attttccatgattaattgttagtatttaatttgtaattatatagtgtgttgccatat |
6139571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 7711 - 7677
Alignment:
| Q |
23 |
tatttaatttgtaattatatagtgtgttgccatat |
57 |
Q |
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| T |
7711 |
tatttaatttgtaattatatagtgtgttgccatat |
7677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 18261 - 18231
Alignment:
| Q |
23 |
tatttaatttgtaattatatagtgtgttgcc |
53 |
Q |
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| T |
18261 |
tatttaatttgtaattatatagtgtgttgcc |
18231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 25364356 - 25364390
Alignment:
| Q |
23 |
tatttaatttgtaattatatagtgtgttgccatat |
57 |
Q |
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| T |
25364356 |
tatttaatttgtaattatatagtgtgttgccatat |
25364390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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