View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_low_37 (Length: 281)
Name: NF15554_low_37
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 12192425 - 12192695
Alignment:
| Q |
1 |
tcaccaacccttatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagata |
100 |
Q |
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| T |
12192425 |
tcaccaaccctaatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtatcctctgtttcaattcaaggtttattagagata |
12192524 |
T |
|
| Q |
101 |
ttaattaaagccaaaatagaagacattttcaaaagtaaacttacaaataagtttccttgggcataaaattgtgtcaatttaagttcaaaacttggattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12192525 |
ttaattaaagccaaaatagaagacattttcaaaagtaaacttacaaataagtttccttgggcataaaattgtgtcaatttaagttcaaaacttggattct |
12192624 |
T |
|
| Q |
201 |
tattgttggatttcttattatttgcttcagctattgaacatctcttagccttcttcgtcatgcctcctttg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12192625 |
tattgttggatttcttattatttgcttcagctattgaacatctcttagccttcttcgtcatgcctcctttg |
12192695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 12879166 - 12878894
Alignment:
| Q |
1 |
tcaccaacccttatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagata |
100 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| ||||| ||||||||| |
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| T |
12879166 |
tcaccaacccttaaccttgcaaacccttcgaactcgttcaagtattctcttgaaaactttgttggtatccactgtttcaattcttggtttgttagagata |
12879067 |
T |
|
| Q |
101 |
ttaattaaagccaaaa--tagaagacattttcaaaagtaaacttacaaataagtttccttgggcataaaattgtgtcaatttaagttcaaaacttggatt |
198 |
Q |
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| T |
12879066 |
ttaattaaagccaaaaattagtagacattttaaagagtaaacttacacataaacggccatggacataacttcgtgtcaatttaagttcaaaacttggatt |
12878967 |
T |
|
| Q |
199 |
cttattgttggatttcttattatttgcttcagctattgaacatctcttagccttcttcgtcatgcctcctttg |
271 |
Q |
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||| |||||||||| |||| || ||| ||||||||| ||||| || ||||| ||||||| ||||||| |
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| T |
12878966 |
tccattattggatttctcattaaccactccagttattgaacacctctttgctttcttagtcatgcttcctttg |
12878894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 12886421 - 12886529
Alignment:
| Q |
3 |
accaacccttatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatatt |
102 |
Q |
| |
|
|||||||||||| ||||| | |||| || | |||||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |
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| T |
12886421 |
accaacccttattgttgcagttcctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttcaaatcatagtttattagagatatt |
12886520 |
T |
|
| Q |
103 |
aattaaagc |
111 |
Q |
| |
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||||||||| |
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| T |
12886521 |
aattaaagc |
12886529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 12941664 - 12941550
Alignment:
| Q |
3 |
accaacccttatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatatt |
102 |
Q |
| |
|
||||||||||| ||||| |||||| || |||||||||| |||||||||||||| || ||||| || ||||||||| | | ||||||||||||||||| |
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| T |
12941664 |
accaacccttactgttgcagtccctttaaaatcgttcaagtgttctcttgaaaactcacatggtaaccactgtttcaaataatggtttattagagatatt |
12941565 |
T |
|
| Q |
103 |
aattaaagccaaaat |
117 |
Q |
| |
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||||||||| ||||| |
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| T |
12941564 |
aattaaagctaaaat |
12941550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 12977462 - 12977531
Alignment:
| Q |
48 |
tcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
117 |
Q |
| |
|
||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
12977462 |
tcttgaaaagtcacttggtatcctctatttcaattcaaggtttattagagatattagttaaagacaaaat |
12977531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 12949667 - 12949588
Alignment:
| Q |
38 |
tcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
117 |
Q |
| |
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|||||| |||||||||||||| || ||||| || ||||||||| | | |||||||||||||||||||||||||| ||||| |
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| T |
12949667 |
tcaagtgttctcttgaaaactcacatggtaaccactgtttcaaataatggtttattagagatattaattaaagctaaaat |
12949588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 12955305 - 12955227
Alignment:
| Q |
39 |
caagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
117 |
Q |
| |
|
||||| |||||||||||||| || ||||| || ||||||||| | | |||||||||||||||||||||||||| ||||| |
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| T |
12955305 |
caagtgttctcttgaaaactcacgtggtaaccactgtttcaaataatggtttattagagatattaattaaagctaaaat |
12955227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 19757042 - 19756973
Alignment:
| Q |
48 |
tcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
117 |
Q |
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||||||||| | |||||||| ||||| |||||||||||||||||||||||||| || |||||||||||| |
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| T |
19757042 |
tcttgaaaagtcacttggtatcctctatttcaattcaaggtttattagagataatatgtaaagccaaaat |
19756973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 12922950 - 12923023
Alignment:
| Q |
37 |
ttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaag |
110 |
Q |
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||||||| |||||||||||||| | |||||| || ||||||||| ||| | ||||||||||||||| ||||||| |
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| T |
12922950 |
ttcaagtgttctcttgaaaactcaattggtatcccctgtttcaaatcatgttttattagagatattgattaaag |
12923023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 12915872 - 12915952
Alignment:
| Q |
37 |
ttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
117 |
Q |
| |
|
||||||| |||||||||||||| | ||||| || ||||||||| | | ||||||||||| ||| |||||||||| ||||| |
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| T |
12915872 |
ttcaagtgttctcttgaaaactcaaatggtatccactgtttcaaataatggtttattagatataataattaaagctaaaat |
12915952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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