View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15554_low_4 (Length: 655)
Name: NF15554_low_4
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 25 - 625
Target Start/End: Complemental strand, 6315456 - 6314855
Alignment:
| Q |
25 |
ccattgtattaacaaccaatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataaagccatcacttcatcttcatttgt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6315456 |
ccattgtattaacaaccaatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataaagccgtcacttcatcttcatttgt |
6315357 |
T |
|
| Q |
125 |
aaagggatcc-atctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggttttttccatctactatatgcc |
223 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6315356 |
aaagggatcccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggtcttttccatctactatatgcc |
6315257 |
T |
|
| Q |
224 |
tcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315256 |
tcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatat |
6315157 |
T |
|
| Q |
324 |
tccaaagctgcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaa |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315156 |
tccaaagctgcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaa |
6315057 |
T |
|
| Q |
424 |
ctctgcacatgatgaaaatgtcccctgcatgcgtttgaatttgaggtcataggtcactattcccctaagctgttgtagtttcttgccattcaaagaagat |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6315056 |
ttctgcacatgatgaaaatgtcccctgcatgcgtttgaatttgaggtcataggttactattcccctaagctgttgtagtctcttgccattcaaagaagat |
6314957 |
T |
|
| Q |
524 |
atgccttaggaggtgctgtgtgtaggaagggaaagagtgacttctgtccctttttgcaatccacttgtgtgcttttaattccctaacggtcacaggttct |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6314956 |
atgccttaggaggtgctgtgtgtaggaagggaaagagtgacttctggccctttttgcaatccacttgtgtgcttttaattccctaacagtcacaggttct |
6314857 |
T |
|
| Q |
624 |
gc |
625 |
Q |
| |
|
|| |
|
|
| T |
6314856 |
gc |
6314855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 376 - 526
Target Start/End: Complemental strand, 6318236 - 6318086
Alignment:
| Q |
376 |
accattcataatcattgttgtgcagttgttgatgacagtaaaaataaa--ctctgcacatgatgaaaatgtcccctgcatgcgtttgaatttgaggtcat |
473 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||||| || ||| ||| ||||||||||| ||||||| |
|
|
| T |
6318236 |
accattcataatccttgttgtgcagctgttgatgacagtaaaattaaattctctccacatgatgaaactg--acctacatacgtttgaatttaaggtcat |
6318139 |
T |
|
| Q |
474 |
aggtcactattcccctaagctgttgtagtttcttgccattcaaagaagatatg |
526 |
Q |
| |
|
| ||||||| | || || || || ||| ||||| |||||||| |||||||| |
|
|
| T |
6318138 |
atttcactatactcccaaacttttatagcctcttggcattcaaacaagatatg |
6318086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University