View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_low_42 (Length: 251)
Name: NF15554_low_42
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40061734 - 40061970
Alignment:
| Q |
1 |
gaaaggatcgaatcttcgaggaaataattcaagagttggaatatgtaacaaacatttcactggtgaccatgtttttacctgct--gtgtggannnnnnnc |
98 |
Q |
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| T |
40061734 |
gaaaggatcgaatcttcgaggaaataattcaagagttggaatatgtaacaaacatttcactggtgaccatgtttttacctgctctgtgtggatttttttc |
40061833 |
T |
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| Q |
99 |
atgcgtactaaacaacatttttcgaaaaaattacgccaaaaaatagacaagtaggctccatatatacttgtttgcatgcatgcttaacatttatgccacg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40061834 |
atgcgtactaaacaacatttttcgaaaaaattacgccaaaaaatagacaagtaggctccatatatacttgtttgcatgcatgcttaacatttatgccacg |
40061933 |
T |
|
| Q |
199 |
aaaacttaaatcaatcgaaaaagggaaggcatattat |
235 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
40061934 |
aaaacttaaatcaatcgaaaaagggaaggcatattat |
40061970 |
T |
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