View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15554_low_45 (Length: 248)

Name: NF15554_low_45
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15554_low_45
NF15554_low_45
[»] chr4 (13 HSPs)
chr4 (23-182)||(27487795-27487954)
chr4 (1-183)||(27460952-27461142)
chr4 (58-182)||(27505192-27505316)
chr4 (100-179)||(47042615-47042694)
chr4 (100-178)||(20485684-20485762)
chr4 (96-182)||(27480402-27480488)
chr4 (100-178)||(51928851-51928929)
chr4 (100-175)||(24354855-24354930)
chr4 (91-178)||(27477314-27477401)
chr4 (199-234)||(27488109-27488144)
chr4 (1-45)||(27480330-27480373)
chr4 (1-31)||(27487477-27487507)
chr4 (8-45)||(27505339-27505376)
[»] chr7 (1 HSPs)
chr7 (100-182)||(37175756-37175838)
[»] chr8 (3 HSPs)
chr8 (100-179)||(28811056-28811135)
chr8 (100-178)||(13659622-13659700)
chr8 (100-178)||(13718264-13718342)
[»] chr2 (3 HSPs)
chr2 (100-179)||(35808805-35808884)
chr2 (100-178)||(26204043-26204121)
chr2 (100-182)||(42348127-42348209)
[»] chr5 (1 HSPs)
chr5 (100-178)||(13912389-13912467)
[»] chr1 (1 HSPs)
chr1 (100-178)||(42396948-42397026)
[»] chr6 (2 HSPs)
chr6 (101-179)||(22685789-22685867)
chr6 (101-179)||(22753201-22753279)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 27487795 - 27487954
Alignment:
Q  23 tagattgtatatattgcaaaaaataaccggcaaaaaagcagataattattggataagaattggtttagcaacgagttgctttggccgagtggttaaggcg 122  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  27487795 tagattgtatatattgcaaaaaataaccagcaaaaaagcagataattattggataagaactggtttagcaacaagtcgctttggccgagtggttaaggcg 27487894  T
Q  123 tgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgaatt 182  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27487895 tgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgaatt 27487954  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 27460952 - 27461142
Alignment:
Q  1 aactatcatgatttaa--agatcatagattgtatatattgcaaaaaataac------cggcaaaaaagcagataattattggataagaattggtttagca 92  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||| ||       | | | | |||||||||||||||  |||| |||||||| ||||    
T  27460952 aactatcatgatttaacgagatcatagattgtatatattgaaaaaaaaaaaaaaaaactgaagagaagcagataattattcaataaaaattggttaagca 27461051  T
Q  93 acgagttgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgaattc 183  Q
    || ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27461052 acaagtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccctgcgagagttcgaatctctcaggcgacgaattc 27461142  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 27505316 - 27505192
Alignment:
Q  58 aagcagataattattggataagaattggtttagcaacgagttgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgaga 157  Q
    ||||| ||||||||||||||| ||||| | ||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27505316 aagcacataattattggataaaaattgctctagcaacaagtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgaga 27505217  T
Q  158 gttcgaatctctcaggcgacgaatt 182  Q
    |||||||||||||||| ||||||||    
T  27505216 gttcgaatctctcaggtgacgaatt 27505192  T

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Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 47042615 - 47042694
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 179  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47042615 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 47042694  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 20485762 - 20485684
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 178  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20485762 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 20485684  T

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Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 27480402 - 27480488
Alignment:
Q  96 agttgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgaatt 182  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  27480402 agttgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctctcaggcaacgaatt 27480488  T

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Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 51928851 - 51928929
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 178  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51928851 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 51928929  T

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Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 24354855 - 24354930
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcg 175  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24354855 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcg 24354930  T

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Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 27477314 - 27477401
Alignment:
Q  91 caacgagttgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 178  Q
    |||| ||| ||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||| ||||    
T  27477314 caacaagtcgctttggccgagtgggtaaggcgtgtgcctgctaattacatggggtttccccgcaagatttcgaatctctcaggtgacg 27477401  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 27488109 - 27488144
Alignment:
Q  199 ctgtataaatcaagcatctcacttgtcgagtataat 234  Q
    ||||||||||||||||||||||||||||||||||||    
T  27488109 ctgtataaatcaagcatctcacttgtcgagtataat 27488144  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27480330 - 27480373
Alignment:
Q  1 aactatcatgatttaaagatcatagattgtatatattgcaaaaaa 45  Q
    ||||||||||||| || ||||||||||||||||||||||||||||    
T  27480330 aactatcatgatt-aatgatcatagattgtatatattgcaaaaaa 27480373  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 27487477 - 27487507
Alignment:
Q  1 aactatcatgatttaaagatcatagattgta 31  Q
    |||||||||||||||||||||||||||||||    
T  27487477 aactatcatgatttaaagatcatagattgta 27487507  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 27505376 - 27505339
Alignment:
Q  8 atgatttaaagatcatagattgtatatattgcaaaaaa 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  27505376 atgatttaacgatcatagattgtatttattgcaaaaaa 27505339  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 37175756 - 37175838
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgaatt 182  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37175756 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgaatt 37175838  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 28811135 - 28811056
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 179  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28811135 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 28811056  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 13659700 - 13659622
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 178  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13659700 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 13659622  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 13718342 - 13718264
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 178  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13718342 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 13718264  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 35808805 - 35808884
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 179  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35808805 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 35808884  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 26204043 - 26204121
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 178  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26204043 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 26204121  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 42348209 - 42348127
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgaatt 182  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42348209 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgtcgaatt 42348127  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 13912389 - 13912467
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 178  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13912389 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 13912467  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 42397026 - 42396948
Alignment:
Q  100 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 178  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42397026 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 42396948  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 22685867 - 22685789
Alignment:
Q  101 ctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 179  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  22685867 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctcttaggtgacga 22685789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 22753201 - 22753279
Alignment:
Q  101 ctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacga 179  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  22753201 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctcttaggtgacga 22753279  T

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