View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15554_low_52 (Length: 227)

Name: NF15554_low_52
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15554_low_52
NF15554_low_52
[»] chr1 (12 HSPs)
chr1 (29-209)||(30364954-30365133)
chr1 (29-209)||(30366790-30366973)
chr1 (84-209)||(13066944-13067071)
chr1 (62-135)||(13205816-13205889)
chr1 (62-135)||(13136348-13136421)
chr1 (62-135)||(13162883-13162956)
chr1 (67-131)||(13102514-13102578)
chr1 (67-135)||(13131195-13131263)
chr1 (62-137)||(13008547-13008624)
chr1 (95-153)||(13006228-13006288)
chr1 (67-137)||(13095766-13095836)
chr1 (67-125)||(13215537-13215595)
[»] chr6 (2 HSPs)
chr6 (29-138)||(31385057-31385166)
chr6 (37-124)||(31376830-31376917)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 30365133 - 30364954
Alignment:
Q  29 aatcatgcacattgtagatttaatttaggtatgtttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30365133 aatcatgcacattgtagatttaatttaggtatgtttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtct 30365034  T
Q  129 ttagtgcatggagaattaaccatttcacatcttgaagtgttgccctttctgacgcttactatatttcttagaatgtataaa 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30365033 ttagtgcatggagaattaaccatttcacaccttgaagtgttgccctttctgacgcttactata-ttcttagaatgtataaa 30364954  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 30366973 - 30366790
Alignment:
Q  29 aatcatgcacattgtagatttaatttaggtatgtttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacatac-tttacacttttatagtc 127  Q
    |||||| ||||||||||||||| ||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||| |    
T  30366973 aatcatacacattgtagatttactttaggtgtgtttcaaattgcatgtgttttagatgtatgcttataaaatgtgtacatgcttttacacttttatagcc 30366874  T
Q  128 tttagtgcatg--gagaattaaccatttcacatcttgaagtgttgccctttctgacgcttactatatttcttagaatgtataaa 209  Q
    |||||| ||||  ||||||| ||||||||||  | | ||||||||| ||||   | ||| ||||| ||||||| ||||||||||    
T  30366873 tttagttcatgaagagaatttaccatttcaccccattaagtgttgcacttttccaggctgactatctttcttaaaatgtataaa 30366790  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 13067071 - 13066944
Alignment:
Q  84 atgtatgcttataaaatgtgtacatactttacacttttatagtctttagtgcatg--gagaattaaccatttcacatcttgaagtgttgccctttctgac 181  Q
    ||||||||||||||||||||||||| ||||||| |||||||  ||||||||||||  ||||||||| ||||||||  ||||||||||||  |||||  ||    
T  13067071 atgtatgcttataaaatgtgtacatgctttacaattttatatcctttagtgcatgaagagaattaatcatttcacgccttgaagtgttgtactttcccac 13066972  T
Q  182 gcttactatatttcttagaatgtataaa 209  Q
    ||||||||||||||||||||||||||||    
T  13066971 gcttactatatttcttagaatgtataaa 13066944  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 13205816 - 13205889
Alignment:
Q  62 tttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtctttagtgc 135  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  13205816 tttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtacatgctttacacttatatagcctttagtgc 13205889  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 13136421 - 13136348
Alignment:
Q  62 tttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtctttagtgc 135  Q
    |||| ||||| |||||||||| ||| ||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  13136421 tttcaaattgaatgtgtttttcatgcatgcttataaaatgtgtacatgctttacacttatatagcctttagtgc 13136348  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 13162883 - 13162956
Alignment:
Q  62 tttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtctttagtgc 135  Q
    |||| |||||||||||||||| ||| |||||| |||||||||||||| |||||||||| ||||| |||||||||    
T  13162883 tttcaaattgcatgtgtttttcatgcatgcttttaaaatgtgtacatgctttacacttatatagcctttagtgc 13162956  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 13102514 - 13102578
Alignment:
Q  67 aattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtcttta 131  Q
    |||||||||||| ||| ||| ||||||||||||||||||||| |||||||||| ||||| |||||    
T  13102514 aattgcatgtgtctttcatgcatgcttataaaatgtgtacatgctttacacttatatagccttta 13102578  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 13131195 - 13131263
Alignment:
Q  67 aattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtctttagtgc 135  Q
    |||||||||||| ||| ||| |||||||||||||||||||||  ||||||||| ||||| |||||||||    
T  13131195 aattgcatgtgtctttcatgcatgcttataaaatgtgtacatggtttacacttatatagcctttagtgc 13131263  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 13008547 - 13008624
Alignment:
Q  62 tttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacata--ctttacacttttatagtctttagtgcat 137  Q
    |||| |||||||||||| ||| ||| |||| |||||| ||||||||||  |||||||||| ||||| |||||||||||    
T  13008547 tttcaaattgcatgtgtctttgatgcatgcatataaattgtgtacatatgctttacacttatatagcctttagtgcat 13008624  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 13006228 - 13006288
Alignment:
Q  95 taaaatgtgtacatactttacacttttatagtctttagtgcatg--gagaattaaccattt 153  Q
    |||||| ||||||| |||||||||| |||| |||||||||||||  |||||||||||||||    
T  13006228 taaaatatgtacatgctttacacttatatattctttagtgcatgaagagaattaaccattt 13006288  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 13095766 - 13095836
Alignment:
Q  67 aattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtctttagtgcat 137  Q
    |||||||||||| ||| ||| ||||||||||||||||||||  | |||| ||| ||||| |||| ||||||    
T  13095766 aattgcatgtgtctttcatgcatgcttataaaatgtgtacaagcattacccttatatagcctttggtgcat 13095836  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 13215537 - 13215595
Alignment:
Q  67 aattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatag 125  Q
    |||| ||||||| ||| ||| ||||||||||||||||||||| |||| ||||| |||||    
T  13215537 aattacatgtgtctttcatgcatgcttataaaatgtgtacatgctttgcacttatatag 13215595  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 31385166 - 31385057
Alignment:
Q  29 aatcatgcacattgtagatttaatttaggtatgtttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtct 128  Q
    ||||||||| ||||||| |||| ||||||||||||| ||||||||||| | ||| ||||||||||||||||| ||||||| ||||| |||||||||||||    
T  31385166 aatcatgcatattgtaggtttactttaggtatgttttgaattgcatgtttgtttgatgtatgcttataaaatatgtacatgctttatacttttatagtct 31385067  T
Q  129 ttagtgcatg 138  Q
    ||||||||||    
T  31385066 ttagtgcatg 31385057  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 31376830 - 31376917
Alignment:
Q  37 acattgtagatttaatttaggtatgtttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttata 124  Q
    |||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||| || |||||||||||||||    
T  31376830 acattgtagatttactttaggtatgtttcaaattgcatgtgttttaaatttatgcttatgaaatgtgtaaatgctttacacttttata 31376917  T

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