View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15554_low_6 (Length: 617)
Name: NF15554_low_6
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 4632257 - 4631683
Alignment:
| Q |
18 |
atcttggagataagctcaaataagttatttctataaaatctctaaaactatctcacaagttctgatgctagagacgtgatcgtagggaaatcgaaagatt |
117 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4632257 |
atcttggagataagctcaa-taagttatttctataaaatctctaaaactatctcacaagttctgatgctagagacgtgatcgccgggaaatcgaaagatt |
4632159 |
T |
|
| Q |
118 |
taaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagggaaaatcaagtca |
217 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632158 |
taaaagagaattctgaagagaaatggtatgtgattgatttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagggaaaatcaagtca |
4632059 |
T |
|
| Q |
218 |
tggatcagctttgaaacatattaatggagcagcttcggtttccgggtttgtttcttctaacaagcatgaaaagagcatatttgattcacctcctttgcat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632058 |
tggatcagctttgaaacatattaatggagcagcttcggtttccaggtttgtttcttctaacaagcatgaaaagagcatatttgattcacctcctttgcat |
4631959 |
T |
|
| Q |
318 |
aaacaacaaagtgaagggaaaatattaatccttgatttttcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatcttcg |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631958 |
aaacaacaaagtgaagggaaaatattaatccttgatttttcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatcttcg |
4631859 |
T |
|
| Q |
418 |
taatctaagttaacaagcatgatagacccatcttgaatttcgtatgttat-gtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatc |
516 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||| |
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| T |
4631858 |
taatctaagttaacaagcatggtagacccatcttgaatttcgtatgttatcgtttacagattttcggaattatatgcatgtagtatgtatgatttaaatc |
4631759 |
T |
|
| Q |
517 |
agtttccttttaaccaaattaataaatatgtgtttacctacaataatccattccactacaacaaaattttccaaaa |
592 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |
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| T |
4631758 |
agttttcttttaaccaaattaataaatatgtgtttgcctacaataagtcattcctctacaacaaaattttccaaaa |
4631683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 588
Target Start/End: Complemental strand, 27002587 - 27002485
Alignment:
| Q |
486 |
ttatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatccattccactacaacaaaattt |
585 |
Q |
| |
|
|||||||||| |||||| | || || | |||||||| ||||||| || ||||| |||| ||||||| || ||||||| ||||| ||| |||||||||| |
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| T |
27002587 |
ttatatgcatataatatctttgtttgggatcagtttgcttttaagcatattaacaaatctgtgtttgtctgtaataatctattcctctataacaaaattt |
27002488 |
T |
|
| Q |
586 |
tcc |
588 |
Q |
| |
|
||| |
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|
| T |
27002487 |
tcc |
27002485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 80 - 339
Target Start/End: Complemental strand, 48250458 - 48250199
Alignment:
| Q |
80 |
tgatgctagagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgataagagtttgatg |
179 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
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| T |
48250458 |
tgatgctagagacgtgattgcggggaaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatg |
48250359 |
T |
|
| Q |
180 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccgggtttgtttcttctaaca |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||| |||| |
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| T |
48250358 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacagattaaaggagcagcttcggtttttgggtttgtatcttcaaaca |
48250259 |
T |
|
| Q |
280 |
agcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaa |
339 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
48250258 |
aacatgaaaagagtatatttgattcacctcctttgcataaacaacaaagtgatgggaaaa |
48250199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 467 - 585
Target Start/End: Complemental strand, 27892811 - 27892693
Alignment:
| Q |
467 |
tgtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatcca |
566 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |
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| T |
27892811 |
tgtttaccgtttttcggatttatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaacaaatctgtgtttgcctacaataatccg |
27892712 |
T |
|
| Q |
567 |
ttccactacaacaaaattt |
585 |
Q |
| |
|
|||| |||||||||||||| |
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| T |
27892711 |
ttcctctacaacaaaattt |
27892693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 357 - 585
Target Start/End: Complemental strand, 12075215 - 12074987
Alignment:
| Q |
357 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatgatagacccatcttgaatt |
456 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||| | |||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||| |
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| T |
12075215 |
tcagatcgttttggaaatgtaatttta-aatccttcaaacgcaagtactttagaatctttgtactctaagttaactagcatggtagacccatcttgaatt |
12075117 |
T |
|
| Q |
457 |
tcgtatgttat-gtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacct |
555 |
Q |
| |
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||||||||||| ||||| ||| || ||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||| |
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| T |
12075116 |
tcgtatgttatcgtttatggttatttggatttatatacatgtaatatgtatgatttgaatcagtttccttttaaacgaattaacaaatatgtgtttgcct |
12075017 |
T |
|
| Q |
556 |
acaataatccattccactacaacaaaattt |
585 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |
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| T |
12075016 |
acaataatccattcctctataacaaaattt |
12074987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 469 - 526
Target Start/End: Original strand, 875454 - 875511
Alignment:
| Q |
469 |
tttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttt |
526 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
875454 |
tttacagtttttcggatttatatgcatgtaatatgtatgatttgaattagtatccttt |
875511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 29737498 - 29737555
Alignment:
| Q |
357 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatct |
414 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| | |||| ||||||||| ||||| |
|
|
| T |
29737498 |
tcaggtcattttggaaatgtaattttataatccataatgcacgagtactttaaaatct |
29737555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 469 - 592
Target Start/End: Complemental strand, 272756 - 272633
Alignment:
| Q |
469 |
tttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatccatt |
568 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
272756 |
tttacagtttttcggatttatatgcatgtaatatgtatgatttgaattagtatccttttaaccaaattaataaatatgtgtttgcctacaataatccgtt |
272657 |
T |
|
| Q |
569 |
ccactacaacaaaattttccaaaa |
592 |
Q |
| |
|
| |||||||| ||||||||||| |
|
|
| T |
272656 |
tctttacaacaatattttccaaaa |
272633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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