View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15554_low_9 (Length: 565)
Name: NF15554_low_9
Description: NF15554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15554_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 299 - 550
Target Start/End: Original strand, 43170216 - 43170467
Alignment:
| Q |
299 |
ttatgttaaagttggtcagtcatcttgagttacctgtaagaaaagtgagctacttatcggattttgtgcaaccacctcattgtcgaccatgatgcaaaag |
398 |
Q |
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| T |
43170216 |
ttatgttaaagttggtcagtcatcttgagttacctgtaagaaaagtgagctgcttatcggattttgcgcaaccaccttaatgtcgaccatgatgcaaaag |
43170315 |
T |
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| Q |
399 |
ggaaataaaatacattgatactgctagaagttgaaatgcagcgttgcaaatgacacatttatagtgttgtgcagagtttgttatgaacaggttggattcc |
498 |
Q |
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| T |
43170316 |
ggaaataaaatacattgatgctgctagaagttgaaatgcagcgttacaaatgacacatttatagtgttgtgcagagtttgttatgaacaggttggattcc |
43170415 |
T |
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| Q |
499 |
atgctctcttgccatggatttctttccaacttttttcaactgccttccacag |
550 |
Q |
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| T |
43170416 |
atgctctcttgccatggatttctttccaacttttttcaactgccttccacag |
43170467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 79 - 264
Target Start/End: Original strand, 43170023 - 43170209
Alignment:
| Q |
79 |
aatagagtgtaaaa-atttaatcaaatagcaaatcagtgacactgtcaaacttgcagctcgctagtaacttacttcaaattatgtaactagtctattttc |
177 |
Q |
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| T |
43170023 |
aatagagtgtaaaaaatttaatcaaatagcaaatcagtgacactgtcaaacttgcagctcgctagtaacttacttcaaattatgtaactaatctattttc |
43170122 |
T |
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| Q |
178 |
taatttatacaaggcagcatattagaaaatcaaaatacttataaccacatgttcaaccagaaatcttataccggtactggtgggaat |
264 |
Q |
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| T |
43170123 |
taatttatacaagacagcatattagaaaataaaaatacttataaccacatgttcaaccagaaatcttataccggtactggtgggaat |
43170209 |
T |
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