View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_high_18 (Length: 254)
Name: NF15555_high_18
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 36650572 - 36650819
Alignment:
| Q |
1 |
actaggcactccaaaaataccaaacgcagccagatgctcaacaacattaaacatgctcatcaacatcatctgtccgagctgaagatcagcaaccaaggat |
100 |
Q |
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| T |
36650572 |
actaggcactccaagaataccaaacgcagccagatgctcaacaacattaaacacgctcatcaacatcatctgtccaagctgaagatcagcaaccaaggat |
36650671 |
T |
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| Q |
101 |
ttgctactagcatggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgagtaactcggtg |
200 |
Q |
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| T |
36650672 |
ttgctactagcatggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgagtaactcggtg |
36650771 |
T |
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| Q |
201 |
taaaatccataatgaatctattttctccagtgagctcgttcatctcac |
248 |
Q |
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| T |
36650772 |
taaaatccataatgaaactattttctccagtgagctcgttcatctcac |
36650819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 36642969 - 36642879
Alignment:
| Q |
30 |
ccagatgctcaacaacattaaacatgctcatcaacatcatctgtccgagctgaagatcagcaaccaaggatttgctactagcatggtaacc |
120 |
Q |
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| T |
36642969 |
ccagattctcgacgacattaaacacgctcatcaacatcatctgtacgagctgaagatcggaaaccaagcatttgctagtagcatagtaacc |
36642879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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