View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_high_19 (Length: 250)
Name: NF15555_high_19
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 15817768 - 15817553
Alignment:
| Q |
19 |
agtttcgcccacttcaagagtcccctacatgtttgtgcaatcttgattgcaaaagagaaagataaaaatgttataattttagggattaaaatcatattta |
118 |
Q |
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| T |
15817768 |
agtttcgcccacttcaagagtcccctacatgtttgtgcaatcttgattgcaaaagaga--gaaaaaaatgttataatttcagggattaaaatcatattta |
15817671 |
T |
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| Q |
119 |
gaccgcaacnnnnnnngcagagactaaaacaaaaagaagcatgtttacatagaaactcggaaatatgagcaaaatggttgttagctatgatgcaggaaat |
218 |
Q |
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|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15817670 |
aaccgaaactttttttgcagagactaaaacaaaaagaagcatatttacatagaaactcggaaatatgagcaaaatggttgttagctatgatgcaggaaat |
15817571 |
T |
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| Q |
219 |
ttagcttaccagaataat |
236 |
Q |
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|||||||||||||||||| |
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| T |
15817570 |
ttagcttaccagaataat |
15817553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 45935687 - 45935541
Alignment:
| Q |
19 |
agtttcgcccacttcaagagtcccctacatgtttgtgcaatcttgattgcaaaagagaaagataaaaatgttataattttagggattaaaatcatattta |
118 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
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| T |
45935687 |
agtttagcccacttcaagagtcccctgcatgtttgtgcaatcttgattgcaaaagagaaagaaaaaaatgttataatttcaggaattaaaatcatattta |
45935588 |
T |
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| Q |
119 |
gaccgcaacnnnnnnngcagagactaaaacaaaaagaagcatgttta |
165 |
Q |
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||| |||| |||||||| ||||||||| ||||||| |||| |
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| T |
45935587 |
aaccacaacttcttttgcagagaccaaaacaaaatgaagcatattta |
45935541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 45935356 - 45935324
Alignment:
| Q |
204 |
tatgatgcaggaaatttagcttaccagaataat |
236 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
45935356 |
tatgatgcaggaattttagcttaccagaataat |
45935324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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