View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_low_10 (Length: 385)
Name: NF15555_low_10
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 41825157 - 41824802
Alignment:
| Q |
12 |
aagaatatcattaactcttttataccttttgttcaaatcattgaacttgtcttcacattgttgaggtgaaacatagtaccccttttccatcattcctttg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41825157 |
aagaatatcattaactcttttataccttttgttcaaatcattgaacttgtcttcacattgttgaggtgaaacatagtaccctttttccatcattcctttg |
41825058 |
T |
|
| Q |
112 |
gaaactgatttccatttccctttcttttgtaataaaccattagctttctttttatcagcacttaattctgaagtaccagcttcatcaccaatgtaataaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41825057 |
gaaactgatttccatttccctttcttttgtaataaaccattagctttctttttatcagcacttaattctgaagtaccagcttcatcaccaatgtaataaa |
41824958 |
T |
|
| Q |
212 |
cagccattattaagagtcttaccattgtatctgtccatttcattctatgccatggtgatccttttctttttgggtcaccaacagaggtttcatctgctcc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41824957 |
cagccattattaagagtcttaccattgtatctgtccatttcattctatgccatggtgatccttttctttttgggtcaccaacagaggtttcatctgctcc |
41824858 |
T |
|
| Q |
312 |
aaaacatggttcatcttcatcactgaggttgatgttgatttgttgtggtttgttgt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41824857 |
aaaacatggttcatcttcatcactgaggttgatgttgatttgttgtggtttgttgt |
41824802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 26920131 - 26920450
Alignment:
| Q |
16 |
atatcattaactcttttataccttttgttcaaatcattgaacttgtcttcacattgttgaggtgaaacatagtaccccttttccatcattcctttggaaa |
115 |
Q |
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|||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||| ||||||||||| | | |||| |
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| T |
26920131 |
atatcattcactctcttataccttttattcaaatcattaaacttatcttcacattgttgaggtgacacataaaaccctttttccatcatagcccttgaaa |
26920230 |
T |
|
| Q |
116 |
ctgatttccatttccctttcttttgtaataaaccattagctttctttttatcagcacttaattc-tgaagtaccagcttcatcaccaatgtaataaacag |
214 |
Q |
| |
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| |||||||| || || ||||| ||||| |||||| ||| || || |||| | | | | | | | || ||||||||||||||||||||||||||||| |
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| T |
26920231 |
cagatttccactttcccttcttctgtaacaaaccactagactttttcttatttgga-tcagtcccttcagaaccagcttcatcaccaatgtaataaacag |
26920329 |
T |
|
| Q |
215 |
ccattattaagagtcttaccattgtatctgtccatttcattctatgccatggtgatccttttctttttgggtcaccaacagaggtttcatctgctccaaa |
314 |
Q |
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||||||| || || |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||| |||| || ||| ||| |
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| T |
26920330 |
ccattatcaatagccttaccattgtatcagtccatttcattctttgccatggtgaaatcttcctttttgggtcaccaccagagctttcttcagctggaaa |
26920429 |
T |
|
| Q |
315 |
acatggttcatcttcatcact |
335 |
Q |
| |
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| |||||||||||||||||| |
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| T |
26920430 |
atttggttcatcttcatcact |
26920450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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