View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_low_11 (Length: 376)
Name: NF15555_low_11
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 3397760 - 3397567
Alignment:
| Q |
19 |
atactccacttagagttagagtttaatattttgttttgggcatgaggacctcctttgcattaaaaagaagaagatagcatgccaaataatattattcttt |
118 |
Q |
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| T |
3397760 |
atactgcacttagagttagagtttaatattttgttttgggcatgaggacctcctttgcataaaaaagaagaagatagcatgccaaataatattattgttt |
3397661 |
T |
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| Q |
119 |
taaggacaaaattatagtgcatttttctatttgtttttcgtatgattcttcacataaaattcatttttcctaaacacgacaaactttgagaaat |
212 |
Q |
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| T |
3397660 |
taaggacaaaactatagggcatttttctatttgtttttcgtatgattcttcacataaaattcatttttcctaaatacgacaaattttgagaaat |
3397567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 3397496 - 3397421
Alignment:
| Q |
209 |
aaatacaactaagttttatcnnnnnnnataaattaattttatattaattaaaaacatctcacataagtgaaccctt |
284 |
Q |
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| T |
3397496 |
aaatacaactaagttttatctttttttataaattaattttatattaattaaaaacatcttacataagtgaaccctt |
3397421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 3397381 - 3397340
Alignment:
| Q |
325 |
tccaagcaccttcacattgaattgtttaccacccaccctatg |
366 |
Q |
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| T |
3397381 |
tccaagcacattcacattgaattgtttaccacccaccttatg |
3397340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 40442593 - 40442560
Alignment:
| Q |
152 |
tttttcgtatgattcttcacataaaattcatttt |
185 |
Q |
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| T |
40442593 |
tttttcgtatggttcttcacataaaattcatttt |
40442560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 33712251 - 33712223
Alignment:
| Q |
150 |
tgtttttcgtatgattcttcacataaaat |
178 |
Q |
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| T |
33712251 |
tgtttttcgtatgattcttcacataaaat |
33712223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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