View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15555_low_12 (Length: 359)
Name: NF15555_low_12
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 2 - 343
Target Start/End: Original strand, 40763399 - 40763740
Alignment:
| Q |
2 |
catcaacatttttattcttaacattattgatgttttcagggacaattgaaacatcaatttcgtttttgaaaatgtagagtcaaacaattacatccttaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40763399 |
catcaacatttttattcttaacatttttgatgttttcagggacaattgaaacatcaatttcgtttttgaaaatgtagagtcaaacaattacatccttaaa |
40763498 |
T |
|
| Q |
102 |
attaacaaaatttagaaatgatctctaaaattcatacttccctgtctcacgtgtcccttagagacaaattcaaaaactaaattgatcaatccaaatagac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40763499 |
attaacaaaatttagaaatgatctctaaagttcatacttccctgtctcacgtgtcccttagagacaaattcaaaaactaaattgatcaatccaaatagac |
40763598 |
T |
|
| Q |
202 |
taattgatttatgcttctgaagctagtacattttatgcatgttattattgggtggtgtgaatgcagatatctgctgttgctcggattgggaatgctcttg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40763599 |
taattgatttatgcttctgaagctagtacattttatgcatgttattattgggtggtgtgaatgcagatatctgctgttgctcggattgggaatgctcttg |
40763698 |
T |
|
| Q |
302 |
cttatgctacacatacatttttcaacaagcatgggtttcttt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40763699 |
cttatgctacacatacatttttcaacaagcatgggtttcttt |
40763740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 203 - 343
Target Start/End: Original strand, 42911328 - 42911468
Alignment:
| Q |
203 |
aattgatttatgcttctgaagctagtacattttatgcatgttattattgggtggtgtgaatgcagatatctgctgttgctcggattgggaatgctcttgc |
302 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42911328 |
aattgatttatgcttctgaagctagtgaattttatgcatgttactattgggtgatatgaatgcagatatctgctgttgctcggattcggaatgctcttgc |
42911427 |
T |
|
| Q |
303 |
ttatgctacacatacatttttcaacaagcatgggtttcttt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42911428 |
ttatgctacacatacatttttcaacaagcatgggtttcttt |
42911468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 42910826 - 42910974
Alignment:
| Q |
48 |
tgaaacatcaatttcgtttttgaaaatgtagagtcaaacaattacatccttaaaattaacaaaatttagaaatgatctctaaaattcatacttccctgtc |
147 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
42910826 |
tgaaccatcaatttcgtttttgaaaatgtagagttaaacaattccatcctt-aaattaacaaaattttgaaatgatctcta--------acttccctgtc |
42910916 |
T |
|
| Q |
148 |
tcacgtgtcccttagagacaaattcaaaaactaaattgatcaatccaaatagactaat |
205 |
Q |
| |
|
||| ||| |||| |||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42910917 |
tcatatgttccttcaagacaatttcaaaaactaaattgatcaatccaaatagattaat |
42910974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 28615743 - 28615785
Alignment:
| Q |
163 |
agacaaattcaaaaactaaattgatcaatccaaatagactaat |
205 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
28615743 |
agacaatttcaaaaactaaattgatcaatctaaagagactaat |
28615785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University