View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_low_14 (Length: 337)
Name: NF15555_low_14
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 46159398 - 46159082
Alignment:
| Q |
1 |
atatttataaagaatagaataaatgtatctaataacttgtaactaaccttatatttaagggtagtttttcgtttaaaaagagcatacaattagggacaga |
100 |
Q |
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| T |
46159398 |
atatttataaagaatagaataaatgtatctaataacttgtaactagccttatatttaagg-tagtttttcctttaaaaagagcatacaatcagggacaga |
46159300 |
T |
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| Q |
101 |
gataataccattggaactggtggatggagcctaagtgtttcagtcaaagctgcatgcaggtactacatctttttcatgctttcttcggttattctagttg |
200 |
Q |
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| T |
46159299 |
gataataccattggaattggtggatggagcctgagtgtttcagtcaaagctgcatccaggtactgcatctttttcatgctttcttcggttattctagttg |
46159200 |
T |
|
| Q |
201 |
caagttcatcagtggttgatccatcttctacttttgttgcctccctaatctcttgagcaattttttcctgaacatgaggatgcttgcagagttggtaaat |
300 |
Q |
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| T |
46159199 |
caagttcatcagtggttgatccatcttctacttttgttgcctccctaatctcttgagcaattttttcctgaacatgaggatgcttgcagagttggtaaat |
46159100 |
T |
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| Q |
301 |
aaatcaggaaagagtgat |
318 |
Q |
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| T |
46159099 |
aaatcaggaaagagtgat |
46159082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 65 - 319
Target Start/End: Complemental strand, 46166412 - 46166158
Alignment:
| Q |
65 |
tttttcgtttaaaaagagcatacaattagggacagagataataccattggaactggtggatggagcctaagtgtttcagtcaaagctgcatgcaggtact |
164 |
Q |
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| T |
46166412 |
tttttccttaaaaaagagcatataattagggatagagataataccactggaactggtgggtggagcctgagtgtttcagtcaaagctgcatgcaggtact |
46166313 |
T |
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| Q |
165 |
acatctttttcatgctttcttcggttattctagttgcaagttcatcagtggttgatccatcttctacttttgttgcctccctaatctcttgagcaatttt |
264 |
Q |
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| T |
46166312 |
gcatcttttccatgctttcttcagttaatctagctgcaagttcatcaatagttgatccatcttctactttagttgcctccataatctcctgtgcaatttt |
46166213 |
T |
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| Q |
265 |
ttcctgaacatgaggatgcttgcagagttggtaaataaatcaggaaagagtgatt |
319 |
Q |
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| T |
46166212 |
ttcctgaacatgaggatgcttgcaaagttggtaaagaaaccaggaaagagtgatt |
46166158 |
T |
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