View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_low_16 (Length: 302)
Name: NF15555_low_16
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 8797130 - 8796869
Alignment:
| Q |
21 |
accatggaagctcttcttcctcttcttcttctgtcaaatccaagatcatggctcatcctcactatcaccgtctcttggaagcctacatcaactgtcaaaa |
120 |
Q |
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| T |
8797130 |
accatggaagctcttcttcctcttcttcttctgtcaaatccaagatcatggctcatcctcactatcaccgtctcttggaagcctacatcaactgtcaaaa |
8797031 |
T |
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| Q |
121 |
ggtcagaacnnnnnnnnngaagataattattttgaaaacgatgtgtgtgtaattaatttctttgtacnnnnnnngtttgacaagtttggatctgatgagc |
220 |
Q |
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| T |
8797030 |
ggtcagaa---aaaaaaagaagataattattttgaaaacgatgtgtgtgtaattaatttctttgtactttttttgtttgacaagtttggatctgatgagc |
8796934 |
T |
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| Q |
221 |
tgtgttgtataattgtactttgaaactgtggccttttgttttcatttccatttattactaatatt |
285 |
Q |
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| T |
8796933 |
tgtgttgtataattgtactttgaaactgtggccttttgttttcatttccatttattactaatatt |
8796869 |
T |
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