View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_low_19 (Length: 283)
Name: NF15555_low_19
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 19816328 - 19816556
Alignment:
| Q |
18 |
gagtgaaccattggtctgggtatccggcgattctcggcctggaggaaacaagagaaagaagaacgtgagtgagtttgttgtaagaagcgtgagtgatgct |
117 |
Q |
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| T |
19816328 |
gagtgaaccactggtctgggtatccagcgattctcggcctggaggaaataagagaaagaagaacgtgagtgagtttgttgtgagaagcgtgagtgatgct |
19816427 |
T |
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| Q |
118 |
taacttaccttcaaatgtcgaagaagcgcgattgatgcttacttatctttgagattgacactgcaacacacagagcaaaaacgtcgaagaacgacctcgt |
217 |
Q |
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| T |
19816428 |
taacttaccttcaaatgtcgaagaagcgtcattgatgcttacttatctttgagattgacactgcaacacatgaagaaaaaatgtcaaagaacgac--cgt |
19816525 |
T |
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| Q |
218 |
aagagaaagagacggtaagatgctcacttac |
248 |
Q |
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| T |
19816526 |
aagagaaagagacggcaagatgctcacttac |
19816556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 8208367 - 8208439
Alignment:
| Q |
172 |
ttgacactgcaacacacagagcaaaaacgtcgaagaacgacctcgtaagagaaagagacggtaagatgctcac |
244 |
Q |
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| T |
8208367 |
ttgagactgcaacacacgaagcaaaaatgtcgaagaacgacctcgtaagagaaagagacgacaagatgctcac |
8208439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 46512913 - 46512804
Alignment:
| Q |
138 |
aagaagcgcgattgatgcttacttatctttgagattgacactgcaacacacagagcaaaaacgtcgaagaacgacctcgtaagagaaagagacggtaaga |
237 |
Q |
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| T |
46512913 |
aagaagcgtgattgatgcttacttatctttgagattgacactacaacacacggag-aaaaatgtcgaagaacgacctcgtaagagaaagagacggcaaga |
46512815 |
T |
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| Q |
238 |
tgctcacttac |
248 |
Q |
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| T |
46512814 |
tgctcacttac |
46512804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 46512994 - 46512893
Alignment:
| Q |
18 |
gagtgaaccattggtctgggtatccggcgattctcggcctggaggaaacaagagaaagaagaacgtgagtgagtttgttgtaagaagcgtgagtgatgct |
117 |
Q |
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|||||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
46512994 |
gagtgaaccactggtctgggtatctgacgattctcggcctggaggaaataagagaaagaagaacgtgtgtgagtttgttgtaagaagcgtgattgatgct |
46512895 |
T |
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| Q |
118 |
ta |
119 |
Q |
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|| |
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| T |
46512894 |
ta |
46512893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 1203857 - 1203953
Alignment:
| Q |
37 |
gtatccggcgattctcggcctggaggaaacaagagaaagaagaacgtgagtgagtttgttgtaagaagcgtgagtgatgcttaacttaccttcaaatg |
134 |
Q |
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| T |
1203857 |
gtatccagcgattctcggcctggaggaaataagagaaagaagaacgtgagtgagtttgttgtgagaagtgtgagtgatgc-tgacttaccttaaaatg |
1203953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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