View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_low_2 (Length: 614)
Name: NF15555_low_2
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Complemental strand, 2458782 - 2458332
Alignment:
| Q |
9 |
gagatgaaaattgaaggagttaccgttgaaaagtaaatcatcaacatagacaacaaaataggccacaattaatattgtctttatggccacatatatatta |
108 |
Q |
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| T |
2458782 |
gagatgaaaattgaaggtgttaccgttgaaaagtaaatcatcaacatagacaacaaaataggccacaattaatattgtctttatggccacatatatatta |
2458683 |
T |
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| Q |
109 |
gtgtatgcatttggagcttccttgaggccataaagagacctttgaagcatgcaaacataattagatcgtatgtatatttgatacacaaaaacaggtggtt |
208 |
Q |
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| T |
2458682 |
gtgtatgcatttggagcttcgttgaggccataaagagacttttgaagcatgcaaatataattaga--gtatgtatatttgatacacaaaaacaggtggtt |
2458585 |
T |
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| Q |
209 |
gacacatatatacttcttcattaaaagtttcattgagaagaaatagaaatgcataacaccattttgtttgacaacaaggctaaatttgtccttatagtcg |
308 |
Q |
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| T |
2458584 |
gagacatatatacttcttcattaaaagtttcattgagaagaaatagaaatgcataacaccattttgtttgacaacaaggctaaattggtccttatagtcg |
2458485 |
T |
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| Q |
309 |
--------acgttgatggaatcccttagcaactaatcgtgttgtgtaacacaaagtggagccatcagaattcctctttagacaaaaataataaataccac |
400 |
Q |
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| T |
2458484 |
ataccagaacgttgatggaatcccttagcaactaatcgtgttgtgtaatacaaagtggagccatcagaattcctctttagacaaaaaaaataaataccat |
2458385 |
T |
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| Q |
401 |
aatttttaaaacagatggcattaattagtttgaaagttatatgtgtgcgtcta |
453 |
Q |
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| T |
2458384 |
aatttttaaaatagatgacattaattagtttggaagttatatgtgtgtgtcta |
2458332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 514 - 597
Target Start/End: Complemental strand, 2458269 - 2458188
Alignment:
| Q |
514 |
atttgagaagtatatatcatcatgatcgtaatgagtcgggaactcatttttcctggtattattcatttacttttcattagtttg |
597 |
Q |
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| T |
2458269 |
atttgagaagtatatatcatcatgatcgtaatgagtcgggaactcatttttcctggtattattcatttac--ttcattagtttg |
2458188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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