View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15555_low_20 (Length: 261)

Name: NF15555_low_20
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15555_low_20
NF15555_low_20
[»] scaffold0048 (5 HSPs)
scaffold0048 (7-158)||(59572-59723)
scaffold0048 (7-158)||(86139-86290)
scaffold0048 (66-125)||(44295-44354)
scaffold0048 (200-261)||(86037-86097)
scaffold0048 (197-234)||(47159-47196)
[»] scaffold0185 (2 HSPs)
scaffold0185 (7-158)||(6205-6356)
scaffold0185 (196-261)||(6394-6459)


Alignment Details
Target: scaffold0048 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 59572 - 59723
Alignment:
Q  7 aaaaatctatggaaaagcccaatcttttttctaatcccactttctnnnnnnnnnnnntatataaaagtcacataatccttgaacctgtctctaacaagga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||| |||||||||||||||||||    
T  59572 aaaaatctatggaaaagcccaatcttttttctaatcccactttctaaaaagaaaaaatatataaaagtcacataatccttcaacctgtctctaacaagga 59671  T
Q  107 gcacctaagtggccttctcactttatttcccccaactttgaactctttcact 158  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  59672 gcacctaagtggccttctctctttatttcccccaactttgaactctttcact 59723  T

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Target: scaffold0048; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 86290 - 86139
Alignment:
Q  7 aaaaatctatggaaaagcccaatcttttttctaatcccactttctnnnnnnnnnnnntatataaaagtcacataatccttgaacctgtctctaacaagga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||| |||||||||||||||||||    
T  86290 aaaaatctatggaaaagcccaatcttttttctaatcccactttctaaaaagaaaaaatatataaaagtcacataatccttcaacctgtctctaacaagga 86191  T
Q  107 gcacctaagtggccttctcactttatttcccccaactttgaactctttcact 158  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  86190 gcacctaagtggccttctcactttatttaccccaactttgaactctttcact 86139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 44295 - 44354
Alignment:
Q  66 tataaaagtcacataatccttgaacctgtctctaacaaggagcacctaagtggccttctc 125  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  44295 tataaaagtcacataatccttcaacctgtctctaacaaggagcacctaagtgcccttctc 44354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 86097 - 86037
Alignment:
Q  200 tgagcagtcacttcacataaatagagagccataacaacaatatataataacccaccaaccaa 261  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  86097 tgagcagtcacttcacataaatagagagccatagcaacaatatataat-acccaccaaccaa 86037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 47159 - 47196
Alignment:
Q  197 cattgagcagtcacttcacataaatagagagccataac 234  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  47159 cattgagcagtcacttcacataaataaagagtcataac 47196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 6205 - 6356
Alignment:
Q  7 aaaaatctatggaaaagcccaatcttttttctaatcccactttctnnnnnnnnnnnntatataaaagtcacataatccttgaacctgtctctaacaagga 106  Q
    ||||||||| ||||||| ||| |||||||||||||||| ||||||            ||||||||||||||||||||||| ||||||| |||||||||||    
T  6205 aaaaatctagggaaaagtccattcttttttctaatccctctttctaaaatgaaaaaatatataaaagtcacataatccttcaacctgtgtctaacaagga 6304  T
Q  107 gcacctaagtggccttctcactttatttcccccaactttgaactctttcact 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6305 gcacctaagtggccttctcactttatttcccccaactttgaactctttcact 6356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 6394 - 6459
Alignment:
Q  196 ccattgagcagtcacttcacataaatagagagccataacaacaatatataataacccaccaaccaa 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6394 ccattgagcagtcacttcacataaatagagagccataacaacaatatataataacccacaaaccaa 6459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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