View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_low_24 (Length: 250)
Name: NF15555_low_24
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 40762943 - 40763173
Alignment:
| Q |
7 |
ctgataagaatcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttatttatatgcaggagtatttaaattac |
106 |
Q |
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| T |
40762943 |
ctgataagaatcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttatttatatgcaggagtatttaaattac |
40763042 |
T |
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| Q |
107 |
tatagtcctagctcctaagtgtattgaaattacaaaatagtatatgagtatgnnnnnnnngttagtaatttcatgg-accaaactaataaacggaaaaca |
205 |
Q |
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| T |
40763043 |
tatagtcctagctcctaagtgtattgaaattacaaaatagtatatgagtat---------gtt-----ttttttggtaccaaactaataaacggaaaaca |
40763128 |
T |
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| Q |
206 |
tatttgactttgagtgtgccaaaaccgaatgtcacttttatccgc |
250 |
Q |
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| T |
40763129 |
tatttgactttgagtgtgtcaaaaccgaatgtcacttttatccgc |
40763173 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 42910360 - 42910424
Alignment:
| Q |
17 |
tcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttat |
81 |
Q |
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| T |
42910360 |
tcttgaatccttgcgtgattttgttcaccttcgttcaagaaccaacacggtgcgtttctttttat |
42910424 |
T |
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