View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_low_6 (Length: 442)
Name: NF15555_low_6
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 5 - 424
Target Start/End: Original strand, 6272945 - 6273364
Alignment:
| Q |
5 |
atgaaacatactacatgattctaaattttatatatttaattattgaattagaagttctaagttattaaaacatatatnnnnnnnngttctaaatttttaa |
104 |
Q |
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| T |
6272945 |
atgaaacatactacatgattctaaattttatatatttaattattgaattagaagttctaagttattaaaacatatataaaaaaaagttctaaatttttaa |
6273044 |
T |
|
| Q |
105 |
tttgcttatattacgtttaatctttatatgtgattaataactgatttggtacaccttatcatactcattaatcatttaataaacatgattaatcacatat |
204 |
Q |
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| T |
6273045 |
tttgcttatattacgtttaatctttatatgtgattaataactgatttggtacaccttatcatactcattaatcatttaataaacatgattaatcacatat |
6273144 |
T |
|
| Q |
205 |
ctaaattatattaactatataacataatttatagtcgaattttcatgttaaattcgtgccttaaaatgctatttctcgttgacaatttggtagttaaggt |
304 |
Q |
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| T |
6273145 |
ctaaattatattaactatataacataatttatagtcgacttttcatgttaaattcgtgccttaaaatgctatttctcgttgacaatttggtagttaaggt |
6273244 |
T |
|
| Q |
305 |
cttacgtaactactatagtaataacatgaatgaatacgtggtgaattctacatcacaaaccttacctaactaatttatgacaatatataccaaagtcccc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6273245 |
cttacgtaactactatagtaataacatgaatgaatacgtggtgaattctacatcacaaaccttacctaactaatttatgacaatatataccaaagtcccc |
6273344 |
T |
|
| Q |
405 |
acttttatagagtcacaact |
424 |
Q |
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| T |
6273345 |
agttttatagagtcacaact |
6273364 |
T |
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