View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15555_low_9 (Length: 391)
Name: NF15555_low_9
Description: NF15555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15555_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 181 - 337
Target Start/End: Complemental strand, 46512800 - 46512640
Alignment:
| Q |
181 |
aaaataaaagaagtgt--ggtttgtaaatgggaaatatgttcctccggtatgt--acctaccggactgatcggtatttatataccgaatccttaaaaaag |
276 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
46512800 |
aaaataaaagaagtgtttggtttgtaaatgggaaatatgttcctccggtatgtgtacctaccggactgttcggtatttatatactgtatccttaaaaaag |
46512701 |
T |
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| Q |
277 |
gttaatattgtaattttggggggcctgtagagatacagggggcttaaaaagtaaccttcat |
337 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
46512700 |
gttaatatcgtaattttggggggcctgtagagatatagggggcctaaaaagtaacgttcat |
46512640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 44229395 - 44229319
Alignment:
| Q |
3 |
tgtaacagtggtggtggtggtgatttacgagagaaagaaacagagagaccgtacagggagtgagagatgacatagta |
79 |
Q |
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| T |
44229395 |
tgtaacagtggtggtggtggtgatttatgagagaaagaaacagagagacagtacatgaagtgagagataacatagta |
44229319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 19816560 - 19816699
Alignment:
| Q |
181 |
aaaataaaagaagtgt--ggtttgtaaatgggaaatatgttcctccggtatgtacctaccggactgatcggtatttatataccgaatccttaaaaaaggt |
278 |
Q |
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| T |
19816560 |
aaaataaaagaagtgtttggtttgtaaatgggaaatatgttcctccggtatgtacctatcggactgttcggtatttatataccgcatccttaaaaaaggt |
19816659 |
T |
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| Q |
279 |
taatattgtaattttggggggcctgtagagatacaggggg |
318 |
Q |
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| T |
19816660 |
taatatcgtaattttggggggcctgtagagatataggggg |
19816699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 8208449 - 8208604
Alignment:
| Q |
181 |
aaaataaaagaagtgt--ggtttgtaaatgggaaatatgttcctccggtatgtacctaccggactgatcggtatttatataccgaatccttaaaaaaggt |
278 |
Q |
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|||||||||||||||| |||||||||| | || ||| |||||| ||||||||| || | |||| |||||||||||||| | | |||||||||| |
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| T |
8208449 |
aaaataaaagaagtgtttggtttgtaaacgtagaaaatgatcctccagtatgtacccactgaactgttcggtatttatatatagttcgcataaaaaaggt |
8208548 |
T |
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| Q |
279 |
taatattgtaattttggggggcctgtagagataca--gggggcttaaaaagtaacc |
332 |
Q |
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||||| ||||||||| ||| |||||||||||| | |||||| |||||||||||| |
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| T |
8208549 |
caatatcgtaattttgtgggacctgtagagatataaggggggcctaaaaagtaacc |
8208604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 1203948 - 1204087
Alignment:
| Q |
181 |
aaaataaaagaagtgt--ggtttgtaaatgggaaatatgttcctccggtatgtacctaccggactgatcggtatttatataccgaatccttaaaaaaggt |
278 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |
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| T |
1203948 |
aaaatgaaagaagtgtttggtttgtaaatgggaaatatgttcctccggtatgtacctaccggactgtttggtatttatataccgcatccttaaaaaaggt |
1204047 |
T |
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| Q |
279 |
taatattgtaattttggggggcctgtagagatacaggggg |
318 |
Q |
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| T |
1204048 |
taatatcgtaattttggggggcctgtagagatataggggg |
1204087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 12408817 - 12408892
Alignment:
| Q |
10 |
gtggtggtggtggtgatttacgagagaaagaaacagagagaccgtacagggagtgagagatgacatagtacaagtt |
85 |
Q |
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| T |
12408817 |
gtggtggtggtggtgatttacgagagaaaggaacagagagacagtacagggagtgagagatgacatagtacaagtt |
12408892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 12408932 - 12408964
Alignment:
| Q |
119 |
actgtacaaggatacggtgtctaaattgtgttt |
151 |
Q |
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| T |
12408932 |
actgtacaaggatacggtgtctaaattgtgttt |
12408964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 51276067 - 51275996
Alignment:
| Q |
13 |
gtggtggtggtgatttacgagagaaagaaacagagagaccgtacagggagtgagagatgacatagtacaagttg |
86 |
Q |
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| T |
51276067 |
gtggtggtggtggtttacgagagaaagaaaca--gagacaatacagggagtgagagatgacatagtacaggttg |
51275996 |
T |
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