View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15556_high_3 (Length: 367)
Name: NF15556_high_3
Description: NF15556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15556_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 22 - 367
Target Start/End: Original strand, 45546358 - 45546703
Alignment:
| Q |
22 |
catcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttcttaatactgtccctaactttcctagc |
121 |
Q |
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| T |
45546358 |
catcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttcttaatactgtccctaactttcctagc |
45546457 |
T |
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| Q |
122 |
ctttgccttcaccctactcataacagacttcttctcaggctcaggctcaggctcagtgggctcttctggtccatgtgtcaatgtcactgcatccaaaata |
221 |
Q |
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| T |
45546458 |
ctttgccttcaccctactcataacagacttcttctcaggctcaggctcagaattagtgggctcttctggtccatgtgtcagtgtcacttcatccaaaata |
45546557 |
T |
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| Q |
222 |
gattcaaataaagtagnnnnnnntgcttcaaacttaaaaactaccaagtatagtatatattaactcttgctccaaacaaaatgatatgatacctggatat |
321 |
Q |
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| T |
45546558 |
gattcaaataaagtagaaaaaaatgcttcaaacttaaaaactaccaagtatagtatatattaactcttgcttcaaacaaaatgatatgatacctggatat |
45546657 |
T |
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| Q |
322 |
ggttcaacgttaggtgagttttgttcatcgttctccccttccacat |
367 |
Q |
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| T |
45546658 |
ggttcaacgttaggtgagttttgttcatcgttctccccttccacat |
45546703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 45551601 - 45551732
Alignment:
| Q |
26 |
atcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttcttaatactgtccctaactttcctagccttt |
125 |
Q |
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||||||| || |||||||| ||||| ||| ||||||| |||||||||||| ||| | ||||| || || ||||| ||||| ||| |||| |||||||| |
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| T |
45551601 |
atcatcatgagtatgctgaatttcattgttatgtccattaccatgatcaagtacttgttgaccgtgttttttaattgtgtccttaattttcttagccttt |
45551700 |
T |
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| Q |
126 |
gccttcaccctactcataacagacttcttctc |
157 |
Q |
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| T |
45551701 |
gccttcaccttattcagaacagatttcttctc |
45551732 |
T |
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