View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15556_high_4 (Length: 359)
Name: NF15556_high_4
Description: NF15556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15556_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 1629878 - 1630231
Alignment:
| Q |
1 |
gatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629878 |
gatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaat |
1629977 |
T |
|
| Q |
101 |
gatccaagagtaattatttaaaataaaaaattaaagtaattgtatg----taagaaagcctcaagtataatttaaatattataaacctatcttattataa |
196 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629978 |
gatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagtataatttaaatattataaacctatcttattataa |
1630077 |
T |
|
| Q |
197 |
aaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630078 |
aaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaac |
1630177 |
T |
|
| Q |
297 |
acttctagaacttgttattatggtattttgcataccatcaccaaccagtataat |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
1630178 |
acttctagaacttgttattatggtattttgcatcccatcaccaaccagcataat |
1630231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 10820814 - 10820598
Alignment:
| Q |
7 |
agcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatcca |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820814 |
agcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatcca |
10820715 |
T |
|
| Q |
107 |
agagtaattatttaaaataaaaaattaaagtaattgtatgtaagaaagcctcaagtataatttaaatattataaacctatcttattataaaaatttagaa |
206 |
Q |
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||||||||||||||||| | || |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
10820714 |
agagtaattatttaaaa----atatgaaagtaattgtaggtaagaaagccacaattataatttaaatattataaacctatcttagtataaaattttagaa |
10820619 |
T |
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| Q |
207 |
cttcaaatgataaaataaaaa |
227 |
Q |
| |
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||||||| |||||||||||| |
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| T |
10820618 |
cttcaaaatataaaataaaaa |
10820598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 1606580 - 1606689
Alignment:
| Q |
1 |
gatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaat |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1606580 |
gatcttagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaat |
1606679 |
T |
|
| Q |
101 |
gatccaagag |
110 |
Q |
| |
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|||||||||| |
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|
| T |
1606680 |
gatccaagag |
1606689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 236 - 350
Target Start/End: Original strand, 1607121 - 1607235
Alignment:
| Q |
236 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
335 |
Q |
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|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1607121 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1607220 |
T |
|
| Q |
336 |
accaaccagtataat |
350 |
Q |
| |
|
||||||||| ||||| |
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|
| T |
1607221 |
accaaccagcataat |
1607235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 236 - 350
Target Start/End: Original strand, 1624142 - 1624256
Alignment:
| Q |
236 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
335 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1624142 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1624241 |
T |
|
| Q |
336 |
accaaccagtataat |
350 |
Q |
| |
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||||||||| ||||| |
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| T |
1624242 |
accaaccagcataat |
1624256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 238 - 343
Target Start/End: Complemental strand, 10820160 - 10820055
Alignment:
| Q |
238 |
gagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcac |
337 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
10820061 |
T |
|
| Q |
338 |
caacca |
343 |
Q |
| |
|
| |||| |
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|
| T |
10820060 |
cgacca |
10820055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 1623708 - 1623811
Alignment:
| Q |
7 |
agcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatcca |
106 |
Q |
| |
|
|||||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||| |||||||| ||| || |
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| T |
1623708 |
agcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctgaatttaaaagattca |
1623807 |
T |
|
| Q |
107 |
agag |
110 |
Q |
| |
|
|||| |
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|
| T |
1623808 |
agag |
1623811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 247 - 343
Target Start/End: Original strand, 18785179 - 18785275
Alignment:
| Q |
247 |
tataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaacca |
343 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaacca |
18785275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 18781402 - 18781505
Alignment:
| Q |
7 |
agcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatcca |
106 |
Q |
| |
|
||||||||||||||||| || || ||||| || |||||||||||||||||||| || |||||||| |||||||||||||| ||| |||||||| ||| || |
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| T |
18781402 |
agcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaaagattca |
18781501 |
T |
|
| Q |
107 |
agag |
110 |
Q |
| |
|
|||| |
|
|
| T |
18781502 |
agag |
18781505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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