View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15557_low_2 (Length: 386)
Name: NF15557_low_2
Description: NF15557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15557_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 1425930 - 1425758
Alignment:
| Q |
1 |
aaataataaacaactacgattatatttagtagaagaaattcgactatcacatttgnnnnnnnnnagaagatcaactaccatattaatgtagtgaattaaa |
100 |
Q |
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| T |
1425930 |
aaataataaacaacaacgattatatctaatagaagaaactcgactatcacatttgttttttt--agaagatcaactaccatattaatgtagtgaattaaa |
1425833 |
T |
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| Q |
101 |
gtttaaattttgacggagacacatattcatttaatttttgacaatgttttgaatatagttttctatttgtagtgt |
175 |
Q |
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| T |
1425832 |
gtttaaattttgacggagacacatatgcatttaatttttgacaatgttttgaatatagttttctatttgtagtgt |
1425758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 1425597 - 1425557
Alignment:
| Q |
328 |
cgtgtagaactgaaagagaaaaggtcaactatgcttcccat |
368 |
Q |
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| T |
1425597 |
cgtgtagaactgaaagagaaaaggtcaactatgcttcccat |
1425557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 1425687 - 1425651
Alignment:
| Q |
231 |
atgcatgtgacctatgatgaatccataaaaaatttct |
267 |
Q |
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| T |
1425687 |
atgcatgtgacctatgatgaatccataaaaattttct |
1425651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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