View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15557_low_3 (Length: 237)

Name: NF15557_low_3
Description: NF15557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15557_low_3
NF15557_low_3
[»] chr3 (5 HSPs)
chr3 (1-221)||(40741353-40741574)
chr3 (1-140)||(40741959-40742093)
chr3 (173-214)||(13923932-13923973)
chr3 (173-203)||(7871569-7871599)
chr3 (173-214)||(13988293-13988334)
[»] chr2 (6 HSPs)
chr2 (153-214)||(16445878-16445938)
chr2 (145-215)||(7912633-7912702)
chr2 (145-214)||(26696643-26696711)
chr2 (145-215)||(43774423-43774492)
chr2 (173-214)||(22433399-22433440)
chr2 (145-205)||(21292204-21292263)
[»] chr4 (5 HSPs)
chr4 (173-214)||(26994771-26994812)
chr4 (145-215)||(53979626-53979695)
chr4 (173-214)||(53527103-53527144)
chr4 (173-203)||(2926598-2926628)
chr4 (173-214)||(20195251-20195292)
[»] scaffold0020 (1 HSPs)
scaffold0020 (173-213)||(110516-110556)
[»] scaffold0004 (1 HSPs)
scaffold0004 (145-215)||(348336-348405)
[»] chr8 (3 HSPs)
chr8 (173-214)||(8507656-8507697)
chr8 (173-215)||(34192395-34192437)
chr8 (173-214)||(24048325-24048366)
[»] chr7 (4 HSPs)
chr7 (173-214)||(25496886-25496927)
chr7 (173-214)||(32145945-32145986)
chr7 (173-214)||(573300-573341)
chr7 (173-214)||(42206368-42206409)
[»] chr5 (2 HSPs)
chr5 (150-215)||(30960169-30960233)
chr5 (185-214)||(16630602-16630631)
[»] chr6 (3 HSPs)
chr6 (145-203)||(6928439-6928496)
chr6 (173-215)||(19559144-19559186)
chr6 (173-206)||(17272558-17272591)
[»] scaffold0169 (1 HSPs)
scaffold0169 (173-214)||(16152-16193)
[»] chr1 (2 HSPs)
chr1 (173-214)||(26708653-26708694)
chr1 (173-214)||(33495574-33495615)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40741574 - 40741353
Alignment:
Q  1 atgaaaatttgccttactctatatatttatcgataaaaagtaaaagtgaatggttttccc------accactctatttgtaacacacaccccccatatta 94  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||      ||| ||||||||||| |      |||  ||||||    
T  40741574 atgaaaatttgccttactctatatatttattaataaaaagtaaaagtcaatggttttccctttcccaccgctctatttgtacc------cccatatatta 40741481  T
Q  95 atgaaagacaattaagaattt-cccctaaatttcttaaccacctaaatattaatttattgttgccaacaccgattgggtttatcccggatctattatgat 193  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40741480 atgaaagacaattaagaattttcccctaaatttcttaaccacctaaatattaatttattgttgccaacatcgattgggtttatcccggatctattatgat 40741381  T
Q  194 gcagaaactagttggaaaaaattattat 221  Q
    |||||||||||||| ||||||| |||||    
T  40741380 gcagaaactagttgaaaaaaatcattat 40741353  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 40742093 - 40741959
Alignment:
Q  1 atgaaaatttgccttactctatatatttatcgataaaaagtaaaagtgaatggttttcccaccactctatttgtaacacacaccccccatattaatgaaa 100  Q
    ||||||||||||| |||| ||||||| |||  ||||||||||||||| | |||||||||| | ||||||| |||  |      |||| |||||||| |||    
T  40742093 atgaaaatttgccctactatatatatatattaataaaaagtaaaagtcattggttttccc-ctactctatatgtttc------cccctatattaataaaa 40742001  T
Q  101 gacaattaagaattt--cccctaaatttcttaaccacctaaa 140  Q
    |||  ||||||||||  |||||||||||||||||||||||||    
T  40742000 gacgtttaagaattttccccctaaatttcttaaccacctaaa 40741959  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 13923932 - 13923973
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  13923932 ttatcccggatctattatgatgcataaattagttggaaaaaa 13923973  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 7871599 - 7871569
Alignment:
Q  173 ttatcccggatctattatgatgcagaaacta 203  Q
    |||||||||||||||||||||||||||||||    
T  7871599 ttatcccggatctattatgatgcagaaacta 7871569  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 13988293 - 13988334
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| ||| || ||||||||||    
T  13988293 ttatcccggatctattatgatgcataaattatttggaaaaaa 13988334  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 16445938 - 16445878
Alignment:
Q  153 gttgccaacaccgattgggtttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  16445938 gttggcaataccgattgggtt-atcccggatctattatgatgcagaaactagttgaaaaaaa 16445878  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 7912702 - 7912633
Alignment:
Q  145 aatttattgttgccaacaccgattgggtttatcccggatctattatgatgcagaaactagttggaaaaaat 215  Q
    |||||||||||| ||| || | |||||||  ||||||||||||||||||||| |||||||||| |||||||    
T  7912702 aatttattgttggcaagactggttgggttg-tcccggatctattatgatgcataaactagttgaaaaaaat 7912633  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 26696643 - 26696711
Alignment:
Q  145 aatttattgttgccaacaccgattgggtttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||| ||| || | |||||||  ||||||||||||||||||||| |||||||||| ||||||    
T  26696643 aatttattgttggcaagactggttgggttg-tcccggatctattatgatgcataaactagttgaaaaaaa 26696711  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 43774423 - 43774492
Alignment:
Q  145 aatttattgttgccaacaccgattgggtttatcccggatctattatgatgcagaaactagttggaaaaaat 215  Q
    |||||||||||| ||| || | |||||||  |||| |||||||||||||||| |||||||||| |||||||    
T  43774423 aatttattgttggcaagactggttgggttg-tcccagatctattatgatgcataaactagttgaaaaaaat 43774492  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 22433399 - 22433440
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  22433399 ttatcccggatctattatgatgcataaactatttgaaaaaaa 22433440  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 21292263 - 21292204
Alignment:
Q  145 aatttattgttgccaacaccgattgggtttatcccggatctattatgatgcagaaactagt 205  Q
    ||||||| |||| ||| |||| ||||||| |||||||||||||||||||||| ||| ||||    
T  21292263 aatttatcgttggcaagaccggttgggtt-atcccggatctattatgatgcataaattagt 21292204  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 26994771 - 26994812
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  26994771 ttatcccggatctattatgatgcaaaaactagttggaaaaaa 26994812  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 53979626 - 53979695
Alignment:
Q  145 aatttattgttgccaacaccgattgggtttatcccggatctattatgatgcagaaactagttggaaaaaat 215  Q
    |||||||||||| ||| || | |||||||  ||||||||||||||||||||| |||||||||| |||||||    
T  53979626 aatttattgttggcaagactggttgggttg-tcccggatctattatgatgcataaactagttgaaaaaaat 53979695  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 53527103 - 53527144
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  53527103 ttatcccggatctattgtgatgcagaaactagttgaaaaaaa 53527144  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 2926628 - 2926598
Alignment:
Q  173 ttatcccggatctattatgatgcagaaacta 203  Q
    |||||||||||||||||||||||||||||||    
T  2926628 ttatcccggatctattatgatgcagaaacta 2926598  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 20195292 - 20195251
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  20195292 ttatcccggatctattatgatgcataaactatttgaaaaaaa 20195251  T

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Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 110516 - 110556
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaa 213  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  110516 ttatcccggatctattatgatgcagaaactagttgaaaaaa 110556  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 348405 - 348336
Alignment:
Q  145 aatttattgttgccaacaccgattgggtttatcccggatctattatgatgcagaaactagttggaaaaaat 215  Q
    |||||||||||| ||| || | |||||||  ||||||||||||||||||||| |||||||||| |||||||    
T  348405 aatttattgttggcaagactggttgggttg-tcccggatctattatgatgcataaactagttgaaaaaaat 348336  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 8507656 - 8507697
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  8507656 ttatcccggatctattatcatgcagaaactagttgaaaaaaa 8507697  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 34192395 - 34192437
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaat 215  Q
    |||||||||||||||||||||||| |||||||||  |||||||    
T  34192395 ttatcccggatctattatgatgcataaactagttaaaaaaaat 34192437  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 24048366 - 24048325
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  24048366 ttatcccggatctattatgatgcataaactatttgaaaaaaa 24048325  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 25496886 - 25496927
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  25496886 ttatcccggatctattatgatgcataaactatttggaaaaaa 25496927  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 32145945 - 32145986
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  32145945 ttatcccggatctattatgatgcataaactatttggaaaaaa 32145986  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 573341 - 573300
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  573341 ttatcccggatctattatgatgcataaactatttgaaaaaaa 573300  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 42206368 - 42206409
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  42206368 ttatcccggatctattatgatgcataaactatttgaaaaaaa 42206409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 30960233 - 30960169
Alignment:
Q  150 attgttgccaacaccgattgggtttatcccggatctattatgatgcagaaactagttggaaaaaat 215  Q
    ||||||| ||| |||| ||||||| |||||||||||||||||||||| |||||| ||| |||||||    
T  30960233 attgttggcaagaccggttgggtt-atcccggatctattatgatgcataaactatttgaaaaaaat 30960169  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 16630631 - 16630602
Alignment:
Q  185 tattatgatgcagaaactagttggaaaaaa 214  Q
    ||||||||||||||||||||||||||||||    
T  16630631 tattatgatgcagaaactagttggaaaaaa 16630602  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 6928439 - 6928496
Alignment:
Q  145 aatttattgttgccaacaccgattgggtttatcccggatctattatgatgcagaaacta 203  Q
    |||||||||||||||| |||||||| | ||||||| |||||||||| ||||| ||||||    
T  6928439 aatttattgttgccaagaccgattgag-ttatccccgatctattattatgcataaacta 6928496  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 19559186 - 19559144
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaat 215  Q
    |||||| ||||||||||||||||  ||||||||||||||||||    
T  19559186 ttatcctggatctattatgatgcgaaaactagttggaaaaaat 19559144  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 17272591 - 17272558
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagtt 206  Q
    |||||||||||||||||||||||| |||||||||    
T  17272591 ttatcccggatctattatgatgcaaaaactagtt 17272558  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 16152 - 16193
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  16152 ttatcccggatctattatgatgcataaactatttgaaaaaaa 16193  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 26708694 - 26708653
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  26708694 ttatcccggatctattatgatgcataaactatttgaaaaaaa 26708653  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 33495615 - 33495574
Alignment:
Q  173 ttatcccggatctattatgatgcagaaactagttggaaaaaa 214  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  33495615 ttatcccggatctattatgatgcataaactatttgaaaaaaa 33495574  T

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