View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15557_low_4 (Length: 227)
Name: NF15557_low_4
Description: NF15557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15557_low_4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40742990 - 40742764
Alignment:
| Q |
1 |
ataagttttgagtaaatctccatgtctattctcttcagcggtccaagaacgtgaccatataacccatggtgagagacttgaaccactttcatccccaacc |
100 |
Q |
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| T |
40742990 |
ataagttttgagtaaatatccatgtctattctcttcagcggtccaagaacgtgaccatatagcccatggtgagagacttgaaccactttcatccctaacc |
40742891 |
T |
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| Q |
101 |
ccatccaacttgtttatccatgtttggtatgtaggtaatgcttcctcggtgatcatgctacccgccaaagccacgagataatcgtctggaagctcgtttg |
200 |
Q |
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| T |
40742890 |
ccatccaacttgtttatccatgtttggtatgtaggtaatgcttcctcagtgatcatgctacccgccaaagccacgagataatcgtctgaaagctcgtttg |
40742791 |
T |
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| Q |
201 |
ttcgatcccttaaggccttcacttgat |
227 |
Q |
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| T |
40742790 |
ttcgatcccttaaggccttcacttgat |
40742764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40921423 - 40921649
Alignment:
| Q |
1 |
ataagttttgagtaaatctccatgtctattctcttcagcggtccaagaacgtgaccatataacccatggtgagagacttgaaccactttcatccccaacc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| || ||||| |
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| T |
40921423 |
ataagttttgagtaaatctccatgtctattttcttcagcggtccaagagcgtgaccatatagcccatggtgagagacttgaaccagattcgtctccaact |
40921522 |
T |
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| Q |
101 |
ccatccaacttgtttatccatgtttggtatgtaggtaatgcttcctcggtgatcatgctacccgccaaagccacgagataatcgtctggaagctcgtttg |
200 |
Q |
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| T |
40921523 |
ccatccaacttgtttatccatgtttggtacgtaggcaatgcttcctcggtgatcatgccacccaccaaaaccacgagataatcgtctggaagctcatttg |
40921622 |
T |
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| Q |
201 |
ttcgatcccttaaggccttcacttgat |
227 |
Q |
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| T |
40921623 |
ttcgatcccttaaggccttcacttgat |
40921649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 40946350 - 40946544
Alignment:
| Q |
1 |
ataagttttgagtaaatctccatgtctattctcttcagcggtccaagaacgtgaccatataacccatggtgagagacttgaaccactttcatccccaacc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| ||| || ||||| |
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| T |
40946350 |
ataagttttgagtaaatctccatgtctattttcttcggcggtccaagagcgtgaccatatagcccatggtgagagacttgaaccagattcgtctccaact |
40946449 |
T |
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| Q |
101 |
ccatccaacttgtttatccatgtttggtatgtaggtaatgcttcctcggtgatcatgctacccgccaaagccacgagataatcgtctggaagctc |
195 |
Q |
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| T |
40946450 |
ccatccaacttgtttatccatgtttggtacgtaggcaatgcttcctcagtgatcatgctaccgaccaaagctacaagataatcatctggaagctc |
40946544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 40915190 - 40915384
Alignment:
| Q |
1 |
ataagttttgagtaaatctccatgtctattctcttcagcggtccaagaacgtgaccatataacccatggtgagagacttgaaccactttcatccccaacc |
100 |
Q |
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||||||||| || ||||||||||| || || || || || |||||||| |||| |||||| ||||||| | |||| |||| | ||||| | || | |
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| T |
40915190 |
ataagttttaagcaaatctccatgcctgttttcctcggcagtccaagagcgtgtccatatggcccatggactgttgcttgcaccagtctcatcacaaatc |
40915289 |
T |
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| Q |
101 |
ccatccaacttgtttatccatgtttggtatgtaggtaatgcttcctcggtgatcatgctacccgccaaagccacgagataatcgtctggaagctc |
195 |
Q |
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||||| |||| ||||||||||| |||||| ||||||||||||||||| ||||||||| ||| ||||| | || |||||||| || |||||||| |
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| T |
40915290 |
ccatcaaactggtttatccatgattggtacgtaggtaatgcttcctcagtgatcatgtcacctaccaaaactacaagataatcatccggaagctc |
40915384 |
T |
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