View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15558_high_2 (Length: 447)

Name: NF15558_high_2
Description: NF15558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15558_high_2
NF15558_high_2
[»] chr3 (16 HSPs)
chr3 (18-438)||(42876165-42876581)
chr3 (294-430)||(22855845-22855981)
chr3 (249-430)||(8400813-8400996)
chr3 (272-430)||(7417756-7417914)
chr3 (250-379)||(50823707-50823837)
chr3 (250-379)||(50852023-50852153)
chr3 (272-354)||(22371745-22371827)
chr3 (295-430)||(34824514-34824649)
chr3 (294-427)||(35198726-35198859)
chr3 (294-354)||(29635902-29635962)
chr3 (294-378)||(43334092-43334176)
chr3 (249-341)||(37454735-37454829)
chr3 (272-420)||(55467967-55468116)
chr3 (294-354)||(19872521-19872581)
chr3 (272-341)||(37330623-37330692)
chr3 (294-427)||(48077979-48078112)
[»] chr7 (12 HSPs)
chr7 (249-430)||(35109649-35109831)
chr7 (249-430)||(38265229-38265411)
chr7 (249-420)||(41151140-41151313)
chr7 (272-361)||(37095226-37095315)
chr7 (286-374)||(11216783-11216871)
chr7 (272-427)||(38405170-38405325)
chr7 (250-427)||(21577091-21577269)
chr7 (250-353)||(245257-245361)
chr7 (294-374)||(12472135-12472215)
chr7 (272-430)||(16059369-16059527)
chr7 (272-354)||(34721868-34721950)
chr7 (249-354)||(45278486-45278592)
[»] chr1 (12 HSPs)
chr1 (272-430)||(30370076-30370234)
chr1 (272-354)||(30054458-30054540)
chr1 (250-354)||(20014492-20014597)
chr1 (298-374)||(30850882-30850958)
chr1 (249-430)||(12025139-12025321)
chr1 (272-429)||(21090074-21090231)
chr1 (272-361)||(45324033-45324122)
chr1 (251-374)||(4573393-4573517)
chr1 (250-354)||(22024137-22024242)
chr1 (250-354)||(14498072-14498177)
chr1 (294-354)||(44438588-44438648)
chr1 (272-344)||(35371761-35371833)
[»] chr2 (17 HSPs)
chr2 (294-430)||(40155998-40156134)
chr2 (250-430)||(10745225-10745406)
chr2 (250-354)||(36380125-36380230)
chr2 (272-430)||(6672809-6672967)
chr2 (272-354)||(45136986-45137068)
chr2 (250-374)||(17136401-17136526)
chr2 (294-430)||(44650351-44650487)
chr2 (272-430)||(5039378-5039536)
chr2 (249-354)||(21637931-21638037)
chr2 (272-354)||(36836345-36836427)
chr2 (250-354)||(558432-558537)
chr2 (250-354)||(2754044-2754149)
chr2 (250-430)||(26690112-26690293)
chr2 (298-354)||(25987704-25987760)
chr2 (296-430)||(30372720-30372854)
chr2 (313-354)||(3200915-3200956)
chr2 (294-354)||(21487182-21487242)
[»] scaffold0021 (1 HSPs)
scaffold0021 (261-430)||(107696-107865)
[»] chr4 (18 HSPs)
chr4 (256-430)||(36192500-36192674)
chr4 (272-430)||(46494414-46494572)
chr4 (296-430)||(8740406-8740540)
chr4 (272-354)||(51066527-51066609)
chr4 (250-374)||(51713958-51714083)
chr4 (250-354)||(29576449-29576554)
chr4 (297-354)||(39863819-39863876)
chr4 (272-361)||(32139191-32139280)
chr4 (294-361)||(41523424-41523491)
chr4 (272-355)||(51279049-51279132)
chr4 (272-354)||(7173601-7173683)
chr4 (296-430)||(50905706-50905840)
chr4 (294-355)||(676761-676822)
chr4 (313-354)||(4080609-4080650)
chr4 (294-379)||(30970422-30970507)
chr4 (268-332)||(22304103-22304167)
chr4 (249-354)||(55231721-55231827)
chr4 (294-354)||(47627031-47627091)
[»] chr8 (13 HSPs)
chr8 (249-430)||(19723269-19723451)
chr8 (272-430)||(32296655-32296813)
chr8 (272-354)||(17095584-17095666)
chr8 (249-361)||(11404028-11404141)
chr8 (294-354)||(21355022-21355082)
chr8 (250-354)||(4840174-4840279)
chr8 (294-354)||(36261680-36261740)
chr8 (296-354)||(22711543-22711601)
chr8 (249-354)||(29767222-29767326)
chr8 (257-354)||(43288106-43288204)
chr8 (298-354)||(24475038-24475094)
chr8 (294-354)||(28739599-28739659)
chr8 (294-378)||(41553295-41553379)
[»] chr5 (3 HSPs)
chr5 (249-354)||(17064357-17064463)
chr5 (272-430)||(20983019-20983177)
chr5 (298-354)||(18303352-18303408)
[»] chr6 (6 HSPs)
chr6 (272-354)||(20685359-20685441)
chr6 (250-427)||(35163743-35163921)
chr6 (294-373)||(2711772-2711851)
chr6 (294-361)||(17948707-17948774)
chr6 (250-354)||(19686820-19686925)
chr6 (294-354)||(15070159-15070219)
[»] scaffold0691 (1 HSPs)
scaffold0691 (294-354)||(7007-7067)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 42876581 - 42876165
Alignment:
Q  18 caaactagttgattcttgttgactatgccaattaatttgactatgagtatcaaaattagtaccaacttattttttattagtttgaattcaaatcttttta 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42876581 caaactagttgattcttgttgactatgccatttaatttgactatgagtatcaaaattagtaccaacttattttttattagtttgaattcaaatcttttta 42876482  T
Q  118 ttcagttccatcaagctaacaagtaaccataatgattttaaaattttgattactcttattccaaatcggtgtgttacttatccaacaccaaattattcta 217  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  42876481 ttcagttccatcaagctaacaagtaaccaaaatga-tttaaaattttgattactcttattctaaatcggggtgttacttatccaacaccaaattattcta 42876383  T
Q  218 gaacagggaagaggataatattaannnnnnnggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaag 316  Q
     |||||||||||||||||| ||         ||||||||||||||||||| |||||||||||||| || |||||   ||||||||| |||  ||| ||||    
T  42876382 taacagggaagaggataatttt----tttttggttacagaaaatttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaag 42876287  T
Q  317 agcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaa 416  Q
    |||| ||||||||||||||| |||||||||| || ||| |||||| |||||||||||||||  |||| ||||||||||| ||| |||||||| |||||||    
T  42876286 agcacttacaaaggtaattacatttacctccatctaaagacactagtcgggctcgaactcgagatccctcgaatacaagatctatctttttaccactaaa 42876187  T
Q  417 ccaaacctttggagagtataat 438  Q
     ||||||| | ||||| |||||    
T  42876186 tcaaacctatagagaggataat 42876165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 430
Target Start/End: Complemental strand, 22855981 - 22855845
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaataca 393  Q
    |||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||   ||||||||||  ||  ||  ||||||  |    
T  22855981 agggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctccctccaaagacactagcggggctcgaacctgggttctctcgaattta 22855882  T
Q  394 aggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||  ||||||||||| ||||| |||||||||||||||    
T  22855881 agacctgtctttttaccactagaccaaacctttggag 22855845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 249 - 430
Target Start/End: Complemental strand, 8400996 - 8400813
Alignment:
Q  249 ggttacagaaaattt-aggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctc 346  Q
    ||||||| ||||||| |||| ||| ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| |||||||||    
T  8400996 ggttacataaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctc 8400897  T
Q  347 cctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||||||||  |||||   |||||||||| |||  ||  ||| || ||||  ||||||||||| ||||| ||||| |||||||||    
T  8400896 cctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggag 8400813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 272 - 430
Target Start/End: Complemental strand, 7417914 - 7417756
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    ||||||||||  | ||||| | || ||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||  |||||   |||||||    
T  7417914 ggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcg 7417815  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||| |||  ||  ||| || ||||  ||||||||||| ||||| ||||| |||||||||    
T  7417814 aacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggag 7417756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 50823837 - 50823707
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  50823837 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50823738  T
Q  349 tccaaaaacactaatcgggctcgaactcgga 379  Q
    ||||||  ||||||  || ||||||| ||||    
T  50823737 tccaaaggcactaacgggactcgaacccgga 50823707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 250 - 379
Target Start/End: Original strand, 50852023 - 50852153
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  50852023 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50852122  T
Q  349 tccaaaaacactaatcgggctcgaactcgga 379  Q
    ||||||  ||||||  || ||||||| ||||    
T  50852123 tccaaaggcactaacgggactcgaacccgga 50852153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 22371745 - 22371827
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||  | || |||| |||||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  22371745 ggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaa 22371827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 430
Target Start/End: Complemental strand, 34824649 - 34824514
Alignment:
Q  295 gggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaa 394  Q
    ||||||||||||||| | |||||||| |||||||| |||||| |||||||||||| ||||  ||||||  || ||||||||| |  ||  ||| || |||    
T  34824649 gggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggcactaacgggactcgaactcaggttctctcggattcaa 34824550  T
Q  395 ggtctgtctttttatcactaaaccaaacctttggag 430  Q
    | ||| |||||||| ||||| |||||| ||||||||    
T  34824549 gatctatctttttaccactagaccaaatctttggag 34824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 427
Target Start/End: Complemental strand, 35198859 - 35198726
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaataca 393  Q
    |||||||||||||||| | |||||||| ||||||||||| ||| |||||||||||| ||||  || || | |||||||||| |||  ||  ||| || ||    
T  35198859 agggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaaggcattagtggggctcgaacccgggttctctcggattca 35198760  T
Q  394 aggtctgtctttttatcactaaaccaaacctttg 427  Q
    ||  ||||||||||| ||||| ||||| ||||||    
T  35198759 agacctgtctttttaccactagaccaagcctttg 35198726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 29635962 - 29635902
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||| ||||    
T  29635962 agggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctcccttcaaa 29635902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 43334092 - 43334176
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcgg 378  Q
    |||||||||||||||| | ||| |||| ||||||| ||| ||| |||||||||||||| || ||||||   ||||||||||||||    
T  43334092 agggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagacactagcggggctcgaactcgg 43334176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 37454735 - 37454829
Alignment:
Q  249 ggttacagaaaattt-aggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagattt 341  Q
    ||||||| ||||||| |||| ||| ||||||||||  |||| || | |||||||||||||||| | |||||||| ||||||||||||||| ||||    
T  37454735 ggttacacaaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 420
Target Start/End: Complemental strand, 55468116 - 55467967
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggttt-aaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctc 370  Q
    ||||||||||  | ||||| | || |||||||||||||  | |||||||| ||||||||||| ||| |||||||||||||||||  || || | ||||||    
T  55468116 ggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgcattagtggggctc 55468017  T
Q  371 gaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaa 420  Q
    |||| |||| ||  |||||| ||||   |||| ||||| ||||| |||||    
T  55468016 gaacccggattctctcgaattcaagacatgtcattttaccactagaccaa 55467967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 19872521 - 19872581
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||||||| || |||||| | |||||||||||||||  ||||||| ||||||||    
T  19872521 agggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcctccaaa 19872581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 37330623 - 37330692
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagattt 341  Q
    ||||||||||  | ||||| | |||||||||||||||  | |||||||| ||||||||||||||| ||||    
T  37330623 ggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 427
Target Start/End: Original strand, 48077979 - 48078112
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaataca 393  Q
    ||||||||||||| || | |||||||| |||||||| || ||| |||||||| ||||||||  ||||| |  ||||||||| ||   ||  |||||| ||    
T  48077979 agggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaattca 48078078  T
Q  394 aggtctgtctttttatcactaaaccaaacctttg 427  Q
    ||  ||||| ||||| ||||| ||||| ||||||    
T  48078079 agacctgtcattttaccactagaccaagcctttg 48078112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 249 - 430
Target Start/End: Complemental strand, 35109831 - 35109649
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| ||||||||||    
T  35109831 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 35109732  T
Q  348 ctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    |||||||  ||||| | |||||||||| |||  ||  ||| || ||||  ||||||||||| ||||| ||||| |||||||||    
T  35109731 ctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggag 35109649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 430
Target Start/End: Original strand, 38265229 - 38265411
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| ||||||||||    
T  38265229 ggttacataaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 38265328  T
Q  348 ctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    |||||||  |||||   |||||||||| | |  ||  ||| || ||||  ||||||||||| ||||| ||||| |||||||||    
T  38265329 ctccaaaggcactagcggggctcgaacccaggttctctcggattcaagacctgtctttttaccactagaccaagcctttggag 38265411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 249 - 420
Target Start/End: Complemental strand, 41151313 - 41151140
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaa-ggtaattagatttacctc 346  Q
    ||||||| ||||||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||| |||||||| |||||||||    
T  41151313 ggttacaaaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctc 41151214  T
Q  347 cctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaa 420  Q
    |||||||| ||||||   |||||||||| |||  ||  ||| || ||||  ||||||||||| ||||| |||||    
T  41151213 cctccaaagacactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaa 41151140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 37095226 - 37095315
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacacta 361  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  37095226 ggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagacacta 37095315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 11216871 - 11216783
Alignment:
Q  286 tccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaac 374  Q
    ||||||| || ||||||||||||| | |||||||| ||||||||||| ||| |||||||||||||||||  ||||||| ||||||||||    
T  11216871 tccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactaatggggctcgaac 11216783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 427
Target Start/End: Original strand, 38405170 - 38405325
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    ||||||||||  | ||||| | |||||||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||  |||||    ||||||    
T  38405170 ggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccctccaaaggcactagcgaggctcg 38405269  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttg 427  Q
    |||||| | ||  ||| || ||||  ||||||||||| ||||| || || ||||||    
T  38405270 aactcgaattctctcggattcaagacctgtctttttaccactagacgaagcctttg 38405325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 427
Target Start/End: Original strand, 21577091 - 21577269
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||  | |||||||| ||||||||||| ||| |||||||||||    
T  21577091 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccc 21577190  T
Q  349 tccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttg 427  Q
    ||||||  || || | |||||||||| |||  ||  ||| || ||||  ||||||||||| ||||| ||||| ||||||    
T  21577191 tccaaaggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 21577269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 353
Target Start/End: Original strand, 245257 - 245361
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | ||||||| ||||||||| |||||| |||||||||||    
T  245257 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccc 245356  T
Q  349 tccaa 353  Q
    |||||    
T  245357 tccaa 245361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 12472215 - 12472135
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaac 374  Q
    |||||||||||||| | | |||||||| ||||||||||||||| |||||||||||||||||  ||||| | ||||||||||    
T  12472215 agggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcactagtggggctcgaac 12472135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 430
Target Start/End: Original strand, 16059369 - 16059527
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    ||||||||||  | ||||| | |||||||||||||||| | | |||||| ||||||||||||||| |||||||||||| ||||  |||||   |||||||    
T  16059369 ggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggcactagcggggctcg 16059468  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||| |||  ||  ||| || ||||  ||||||||||| |||||  |||| |||||||||    
T  16059469 aacccgggttctctcggattcaagacctgtctttttaccactagtccaagcctttggag 16059527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 34721950 - 34721868
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||  | ||||| | ||||||| |||||||| | |||||||| ||||||||||||||| |||||||||||||||||    
T  34721950 ggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 45278592 - 45278486
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| |||||||||   | ||||| | ||||||||| ||||||||||||||||| |||||||| |||||| |||||| |||    
T  45278592 ggttacaaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcc 45278493  T
Q  348 ctccaaa 354  Q
    || ||||    
T  45278492 cttcaaa 45278486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 430
Target Start/End: Original strand, 30370076 - 30370234
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||| |||||| | |||||||    
T  30370076 ggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagacactagtggggctcg 30370175  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||| |||| ||  |||||| |||    |||||||||| ||||| ||||| |||||||||    
T  30370176 aacccggattctctcgaattcaaaacttgtctttttaccactagaccaagcctttggag 30370234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 30054458 - 30054540
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  30054458 ggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaa 30054540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 20014597 - 20014492
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||| | ||||| | ||||||||||||| || | |||||||||||||||| ||||||| |||||||||||    
T  20014597 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccc 20014498  T
Q  349 tccaaa 354  Q
    ||||||    
T  20014497 tccaaa 20014492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 374
Target Start/End: Original strand, 30850882 - 30850958
Alignment:
Q  298 aagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaac 374  Q
    |||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||| |||||||  ||||||||||    
T  30850882 aagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaagacactaacggggctcgaac 30850958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 430
Target Start/End: Complemental strand, 12025321 - 12025139
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| || |||||||  | ||||| | |||||||||||||||| | ||| || | ||||||||||||||| |||||||| |    
T  12025321 ggttacaaaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttc 12025222  T
Q  348 ctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    |||||||  ||||||| |||||||||| | |  ||  |||||| |||| ||||| |||||| ||||| |||||  ||||||||    
T  12025221 ctccaaaggcactaatggggctcgaacccaggttctctcgaattcaagatctgtatttttaccactagaccaagtctttggag 12025139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 429
Target Start/End: Complemental strand, 21090231 - 21090074
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||||||||||| ||| ||| ||||||||||||||||   |||||   |||||||    
T  21090231 ggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggcactagcggggctcg 21090132  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttgga 429  Q
    ||| || | ||  |||||| ||||  ||||| ||||| ||||| ||||| ||||||||    
T  21090131 aacccgaattctctcgaattcaagacctgtcattttaccactagaccaagcctttgga 21090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 45324122 - 45324033
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacacta 361  Q
    ||||||||||  | ||||||| |||||||||||||||| | || ||||| ||||||||||| ||| |||||||||||||||||| |||||    
T  45324122 ggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaaagcacta 45324033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 374
Target Start/End: Complemental strand, 4573517 - 4573393
Alignment:
Q  251 ttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccct 349  Q
    ||||| ||| ||||||| ||| |||| |||||| | ||||||  |||||||||||||| | | |||||||| ||||||||||| ||| ||||||||||||    
T  4573517 ttacaaaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccct 4573418  T
Q  350 ccaaaaacactaatcgggctcgaac 374  Q
    ||||| ||| || | ||||||||||    
T  4573417 ccaaagacattagtggggctcgaac 4573393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 22024242 - 22024137
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| | || ||||||||||||| | |||||||| ||||||||||||||| ||||||||||     
T  22024242 gttacataaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcca 22024143  T
Q  349 tccaaa 354  Q
    ||||||    
T  22024142 tccaaa 22024137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 354
Target Start/End: Original strand, 14498072 - 14498177
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| |||||| |||  | ||||| | |||||||||||| ||  | |||||||| ||||||||||||||| |||||||||||    
T  14498072 gttacaaaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccc 14498171  T
Q  349 tccaaa 354  Q
    ||||||    
T  14498172 tccaaa 14498177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 44438588 - 44438648
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||||||  |||||||| || ||||||| ||||||| |||||||||||||||||    
T  44438588 agggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaa 44438648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 35371761 - 35371833
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacc 344  Q
    ||||||||||  | ||||| | |||||||| ||||||| | |||||||| ||||||||||||||| |||||||    
T  35371761 ggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 430
Target Start/End: Complemental strand, 40156134 - 40155998
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaataca 393  Q
    |||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||  |||||   |||||||||| |||| ||  ||| || ||    
T  40156134 agggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccggattctctcggattca 40156035  T
Q  394 aggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||  ||||||||||| ||||| |||||||||||||||    
T  40156034 agacctgtctttttaccactagaccaaacctttggag 40155998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 250 - 430
Target Start/End: Original strand, 10745225 - 10745406
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||| ||||||||||| |||||||| |||||||| |||||| |||||||||||    
T  10745225 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccc 10745324  T
Q  349 tccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    || |||  |||||   ||||||| || |||  ||  |||||| ||||  ||||||||||| ||||||||||| |||||||||    
T  10745325 tctaaaggcactagcggggctcggacccgggttctctcgaattcaagacctgtctttttaccactaaaccaagcctttggag 10745406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 354
Target Start/End: Original strand, 36380125 - 36380230
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||| | ||||| | |||||||||||||||| | |||||||| ||||||||| ||||| |||||||||||    
T  36380125 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccc 36380224  T
Q  349 tccaaa 354  Q
    ||||||    
T  36380225 tccaaa 36380230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 430
Target Start/End: Original strand, 6672809 - 6672967
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||   |||||||||||||| |||||||||||||||||  |||||   ||||| |    
T  6672809 ggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcggggcttg 6672908  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||| |||  ||  ||| || ||||  ||||||||||| ||||| |||||||||||||||    
T  6672909 aacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggag 6672967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 45136986 - 45137068
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||    
T  45136986 ggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 45137068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 17136526 - 17136401
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| |  ||||||||||||||| | |||||||| ||||||||||| ||| |||||||||||    
T  17136526 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 17136427  T
Q  349 tccaaaaacactaatcgggctcgaac 374  Q
    ||||||  ||||||  ||||||||||    
T  17136426 tccaaaggcactaacggggctcgaac 17136401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 430
Target Start/End: Complemental strand, 44650487 - 44650351
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaataca 393  Q
    |||||||| ||||||  | |||||||| ||||||||||||||| |||||||||||||||||  ||||||  | ||||||| ||||  ||  ||| || ||    
T  44650487 agggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacggagctcgaaatcgggttctctcggattca 44650388  T
Q  394 aggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||  ||||||||||| ||||| ||||| |||||||||    
T  44650387 agacctgtctttttaccactagaccaagcctttggag 44650351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 430
Target Start/End: Complemental strand, 5039536 - 5039378
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    |||||||||| || ||||| | |||||||| ||||||| | |||||||| |||||||||||||||  |||||||||||| |||| |||||   | |||||    
T  5039536 ggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctccctctaaaagcactagcggagctcg 5039437  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||| ||   ||  ||| || ||||  ||||||||||| ||||| ||||| |||||||||    
T  5039436 aacccgagttctctcggattcaagacctgtctttttaccactataccaagcctttggag 5039378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 21638037 - 21637931
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| |||||||||| || ||||| | || ||||||||| ||| | |||||||| ||||||||||| ||| ||||||||||    
T  21638037 ggttacaaaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctcc 21637938  T
Q  348 ctccaaa 354  Q
    |||||||    
T  21637937 ctccaaa 21637931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 36836345 - 36836427
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||  | ||||| | |||||||| ||||||| | |||||||| ||||||||||||||| |||||||||||||||||    
T  36836345 ggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 354
Target Start/End: Original strand, 558432 - 558537
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| |||||||||||||||  | | |||||||| ||||||| ||||||| |||||||||||    
T  558432 gttacaaaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccc 558531  T
Q  349 tccaaa 354  Q
    ||||||    
T  558532 tccaaa 558537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 354
Target Start/End: Original strand, 2754044 - 2754149
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||| | | |||||||| ||||||||||| ||| |||||||||||    
T  2754044 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccc 2754143  T
Q  349 tccaaa 354  Q
    ||||||    
T  2754144 tccaaa 2754149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 430
Target Start/End: Complemental strand, 26690293 - 26690112
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||| | ||||| | ||||||||||||||     ||||| || ||||||||||||||| |||||||||||    
T  26690293 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccc 26690194  T
Q  349 tccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||||||| |||||   || ||||||| | || ||  ||||||  ||   ||||||||||| ||||| ||||| |||||||||    
T  26690193 tccaaaagcactagcgggactcgaacccagattctctcgaatttaaaacctgtctttttaccactagaccaagcctttggag 26690112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 25987704 - 25987760
Alignment:
Q  298 aagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||||||  | |||||||| ||||||||||||||| |||||||||||||||||    
T  25987704 aagaccttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaa 25987760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 430
Target Start/End: Original strand, 30372720 - 30372854
Alignment:
Q  296 ggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaag 395  Q
    |||||||||||||| | |||||||| | |||||| || ||| |||||||||| ||||||  |||||   | |||||||| | | |||  |||||| ||||    
T  30372720 ggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggcactagcggagctcgaacccaggatctctcgaattcaag 30372819  T
Q  396 gtctgtctttttatcactaaaccaaacctttggag 430  Q
      || |||||||| ||||| |||||||||||||||    
T  30372820 acctatctttttaccactagaccaaacctttggag 30372854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 3200956 - 3200915
Alignment:
Q  313 aaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||| || ||||||||||||||| |||||||||||||||||    
T  3200956 aaagaacacttacaaaggtaattacatttacctccctccaaa 3200915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 21487242 - 21487182
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||| |||||| | |||||||| |||||||  || ||| |||||||||||||||||    
T  21487242 agggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaaa 21487182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 107696 - 107865
Alignment:
Q  261 tttaggggagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacact 360  Q
    |||||| ||| ||||||||||  | ||||| | |||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||  ||||    
T  107696 tttaggtgaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcact 107795  T
Q  361 aatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    |   ||||||||||||||  ||  |||||| ||||  ||||||||||| ||||| |||||  ||||||||    
T  107796 agcggggctcgaactcgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggag 107865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 430
Target Start/End: Complemental strand, 36192674 - 36192500
Alignment:
Q  256 gaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||    
T  36192674 gaaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaa 36192575  T
Q  355 aacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
      ||||| | |||||||||| |||  ||  |||||| ||||  ||||||||||| ||| | || ||||||||||||    
T  36192574 ggcactagtggggctcgaacccgggttctctcgaattcaagacctgtctttttaccac-agactaaacctttggag 36192500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 430
Target Start/End: Original strand, 46494414 - 46494572
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||| ||| |||||||||||||||||  ||||| | |||||||    
T  46494414 ggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagtggggctcg 46494513  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||| |||  ||  ||| || ||||  ||||| ||||| ||||| |||||||||||||||    
T  46494514 aacccgggttctctcggattcaagacctgtcattttaccactagaccaaacctttggag 46494572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 430
Target Start/End: Complemental strand, 8740540 - 8740406
Alignment:
Q  296 ggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaag 395  Q
    |||||||||||||| | |||||||| ||||||||||| ||| |||||||||||||||||  |||||   |||||||||| ||| |||  ||| || ||||    
T  8740540 ggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctctcggattcaag 8740441  T
Q  396 gtctgtctttttatcactaaaccaaacctttggag 430  Q
      ||||||||||| ||||| ||||| |||||||||    
T  8740440 acctgtctttttaccactagaccaagcctttggag 8740406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 51066609 - 51066527
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||    
T  51066609 ggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaa 51066527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 51713958 - 51714083
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | | ||||| |||||||||||||||| | |||||||| ||||||||||| ||| |||||||||||    
T  51713958 gttacaaaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctccc 51714057  T
Q  349 tccaaaaacactaatcgggctcgaac 374  Q
    | ||||  ||||| | ||||||||||    
T  51714058 ttcaaaggcactagtggggctcgaac 51714083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 29576554 - 29576449
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| || |||||||  ||||||| | |||||||||||||||| | |||||||| |||||||| || ||| |||||||||||    
T  29576554 gttacaaaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccc 29576455  T
Q  349 tccaaa 354  Q
    ||||||    
T  29576454 tccaaa 29576449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 39863819 - 39863876
Alignment:
Q  297 gaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||||||| |||||||| ||||||||||||||| |||||| ||||||||||    
T  39863819 gaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 32139280 - 32139191
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacacta 361  Q
    ||||||||||  | ||||| | || |||||||||| || | ||||| || ||||||||||||||| ||||||||||||||||| ||||||    
T  32139280 ggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaagacacta 32139191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 41523491 - 41523424
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacacta 361  Q
    |||||||||||||| | | |||||||| ||| ||||||| ||| ||||||||||||||||| ||||||    
T  41523491 agggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccctccaaagacacta 41523424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 355
Target Start/End: Original strand, 51279049 - 51279132
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaa 355  Q
    ||||||||||||||||||| |  ||||||||||| ||| | |||||||| ||||||| ||| ||| ||| ||||||||| ||||    
T  51279049 ggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctccctctaaaa 51279132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 7173601 - 7173683
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||| | | |||||||||| ||||||    
T  7173601 ggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 430
Target Start/End: Complemental strand, 50905840 - 50905706
Alignment:
Q  296 ggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaag 395  Q
    |||||||||||||  | ||||||||  ||||||| |||||| ||||||||| |||||||  |||||   |||||||||| | || ||  ||| || ||||    
T  50905840 ggaagaccttcggactcaaagagcacctacaaagataattacatttacctctctccaaaggcactagcggggctcgaacccagattctctcggattcaag 50905741  T
Q  396 gtctgtctttttatcactaaaccaaacctttggag 430  Q
      ||||||||||| ||||| || ||||||||||||    
T  50905740 acctgtctttttaccactagactaaacctttggag 50905706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 676822 - 676761
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaa 355  Q
    |||||||||||||||| | |||||||| ||||||||||| ||| | ||||||||||| ||||    
T  676822 agggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctccctctaaaa 676761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 4080609 - 4080650
Alignment:
Q  313 aaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  4080609 aaagagcatttacaaatgtaattacatttacctccctccaaa 4080650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 379
Target Start/End: Original strand, 30970422 - 30970507
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcgga 379  Q
    |||||||||||||| | | |||||||| ||||||||||| ||| |||||||||||| ||||  ||||| |  ||||||||| ||||    
T  30970422 agggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagtgaggctcgaacccgga 30970507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 22304103 - 22304167
Alignment:
Q  268 gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggta 332  Q
    ||||||||||||||  | ||||| | |||||||||||||||| | |||||||| |||||||||||    
T  22304103 gagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggta 22304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 55231827 - 55231721
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| ||||||||||  | ||||| | ||||||||| ||| || | |||||||| ||||||| ||| ||| ||||||||||    
T  55231827 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcc 55231728  T
Q  348 ctccaaa 354  Q
    || ||||    
T  55231727 cttcaaa 55231721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 47627031 - 47627091
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||||||||| ||| |||||| ||||| | ||||| ||| |||||||||||| ||||    
T  47627031 agggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctcccttcaaa 47627091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 430
Target Start/End: Complemental strand, 19723451 - 19723269
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||| ||| ||| | |||||||| ||||||||||||||| ||||||||||    
T  19723451 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctcc 19723352  T
Q  348 ctccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    |||||||  |||||   |||||||||| |||  ||  ||| || ||||  ||||||||||| ||||| |||||||||||||||    
T  19723351 ctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggag 19723269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 430
Target Start/End: Original strand, 32296655 - 32296813
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    ||||||||||  ||||||| | |||||||||||||||| | |||||||| ||||||||||||||| |||||||||||| ||||  |||||   ||||| |    
T  32296655 ggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcagggcttg 32296754  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||| |||  ||  || ||| ||||  ||||||||||| ||||| |||||||||||||||    
T  32296755 aacccgggttctctcaaattcaagacctgtctttttaccactagaccaaacctttggag 32296813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 17095666 - 17095584
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  17095666 ggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaa 17095584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 361
Target Start/End: Complemental strand, 11404141 - 11404028
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||| ||| ||||||||||    
T  11404141 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 11404042  T
Q  348 ctccaaaaacacta 361  Q
    ||||||| ||||||    
T  11404041 ctccaaagacacta 11404028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 21355022 - 21355082
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  21355022 agggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaa 21355082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 4840279 - 4840174
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||||||| ||||||| ||| |||||||||| || ||||| | |||||||||||| ||  | |||||||| |||||| |||||| | |||||||||||    
T  4840279 gttacagaaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccc 4840180  T
Q  349 tccaaa 354  Q
    ||||||    
T  4840179 tccaaa 4840174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 36261740 - 36261680
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||| ||||||| | |||||||| ||||||||||||||| |||||||||||||||||    
T  36261740 agggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36261680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 22711601 - 22711543
Alignment:
Q  296 ggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||||||||| | |||||||| ||||||||||| ||| |||||||||||||||||    
T  22711601 ggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 22711543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 29767326 - 29767222
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | ||||| || ||||||||||||||  ||||||||||    
T  29767326 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcc 29767229  T
Q  348 ctccaaa 354  Q
    || ||||    
T  29767228 cttcaaa 29767222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 354
Target Start/End: Complemental strand, 43288204 - 43288106
Alignment:
Q  257 aaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||| ||| |||||||||   | ||||| | |||||||||||||||  | ||| | || ||||||||||||||| |||||||||||||||||    
T  43288204 aaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaaa 43288106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 24475038 - 24475094
Alignment:
Q  298 aagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||||||| | ||||| || ||||||||||| ||| |||||||||||||||||    
T  24475038 aagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaa 24475094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 28739599 - 28739659
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||||||||||| | |||||||| ||||||||||| ||| |||||| | ||||||||    
T  28739599 agggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaa 28739659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 41553379 - 41553295
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaactcgg 378  Q
    |||||||||||||| | | ||||| || ||||||||||| ||| |||||| | |||||||| ||| || | || |||||||||||    
T  41553379 agggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttcctccaaagacattagtgggactcgaactcgg 41553295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 17064463 - 17064357
Alignment:
Q  249 ggttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctcc 347  Q
    ||||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| |||||||||| ||||||||||| ||| ||||||||||    
T  17064463 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctcc 17064364  T
Q  348 ctccaaa 354  Q
    |||||||    
T  17064363 ctccaaa 17064357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 430
Target Start/End: Original strand, 20983019 - 20983177
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcg 371  Q
    ||||||||||  | ||||| | ||||||||| |||||| | |||||||| ||||||| ||||||  ||||||||| |||| ||  |||||   |||||||    
T  20983019 ggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggcactagcggggctcg 20983118  T
Q  372 aactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttggag 430  Q
    ||| |||| ||  | | || ||||  ||||||||||||||||| ||||| |||||||||    
T  20983119 aacccggattctcttggattcaagacctgtctttttatcactagaccaagcctttggag 20983177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 18303352 - 18303408
Alignment:
Q  298 aagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||||||||||||||| ||||||| ||| |||  ||||| | ||||||||    
T  18303352 aagaccttcgggtttaaagagcacttacaaaagtatttacgtttactttcctccaaa 18303408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 20685441 - 20685359
Alignment:
Q  272 ggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||    
T  20685441 ggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 20685359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 427
Target Start/End: Original strand, 35163743 - 35163921
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||| ||| ||||||| ||| ||||||||||  | ||||| | |||||||||||||||| | |||||||| ||||||||||| ||| |||||||||||    
T  35163743 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 35163842  T
Q  349 tccaaaaacactaatcgggctcgaactcggaatccttcgaatacaaggtctgtctttttatcactaaaccaaacctttg 427  Q
    ||||||  || || | |||||||||| | |  ||  ||| || ||||  ||||||||||| ||||| ||||| ||||||    
T  35163843 tccaaaggcattagtggggctcgaaccctggttctctcggattcaagacctgtctttttaccactagaccaagcctttg 35163921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 2711772 - 2711851
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacactaatcgggctcgaa 373  Q
    |||||||||||||| | | |||||||| ||||||||||| ||| |||||||||||||||||| ||||| | |||||||||    
T  2711772 agggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaaagcactagtggggctcgaa 2711851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 17948774 - 17948707
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaaaacacta 361  Q
    |||||||||||||||| | |||||||| ||||||||||| ||| ||||||||| ||||||| ||||||    
T  17948774 agggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaagacacta 17948707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 354
Target Start/End: Original strand, 19686820 - 19686925
Alignment:
Q  250 gttacagaaaatttaggg-gagaggatggtgccttaatccaaagaagggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccc 348  Q
    |||||||||| ||||||| ||| ||||| ||||  | || || | ||| |||| ||||||| | |||||||| ||||||||||||||| |||||||||||    
T  19686820 gttacagaaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccc 19686919  T
Q  349 tccaaa 354  Q
    | ||||    
T  19686920 tacaaa 19686925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 15070219 - 15070159
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||||||||||| | || || || ||||||| ||||||| |||||||||||||||||    
T  15070219 agggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaa 15070159  T

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Target: scaffold0691 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 7007 - 7067
Alignment:
Q  294 agggaagaccttcgggtttaaagagcatttacaaaggtaattagatttacctccctccaaa 354  Q
    |||||||||||||||  | ||||| || || |||||||||||| |||||| ||||||||||    
T  7007 agggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaa 7067  T

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