View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15558_high_3 (Length: 442)
Name: NF15558_high_3
Description: NF15558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15558_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 31328990 - 31329404
Alignment:
| Q |
19 |
atatgaagttattttggcaaagaaaatagaaagaatatgtatgaatatttattcaagtttcaagaagatttaaagttgttttttcttaaaaaagaaacaa |
118 |
Q |
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| T |
31328990 |
atatgaagttattttggcaaaggaaatagaaagaacatgtatgaatatttattcaagtttcaagaagatttaaagttgttttttctttaaaaagaaacaa |
31329089 |
T |
|
| Q |
119 |
gatagtgttttgagtattattggttgagagtagaaacaaaagaggaaaacaaaagaatgtgtgatttttcaaagagaaaatgttatttatgtgcaaattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329090 |
gatagtgttttgagtattattggttgagagtagaaacaaaagaggaaaacaaaagaatgtgtgatttttcaaagagaaaatgttatttatgtgcaaattt |
31329189 |
T |
|
| Q |
219 |
tgaattggtnnnnnnnnngtgtaaataaagtgagtaaaggtggttcttgattagaggaaattagtgactgcaaccacaatctaattatgctgaattcaag |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329190 |
tgaattggtaaaaaaaaagtgtaaataaagtgagtaaaggtggttcttgattagaggaaattagtgactgcaaccacaatctaattatgctgaattcaag |
31329289 |
T |
|
| Q |
319 |
gaataatgtgtggagattgtctat-nnnnnnntaggtagcctacaagacttgctctataagatatagaattttaagattatcatatcctaaccactgatt |
417 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329290 |
gaataatgtgtggagattgtctataaaaaaaataggtagcctacaagacttgctctataagatatagaattttaagattatcatatcctaaccactgatt |
31329389 |
T |
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| Q |
418 |
aagccctttgttctt |
432 |
Q |
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||||||||||||||| |
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| T |
31329390 |
aagccctttgttctt |
31329404 |
T |
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