View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15558_low_1 (Length: 678)
Name: NF15558_low_1
Description: NF15558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15558_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 151 - 664
Target Start/End: Original strand, 1347996 - 1348507
Alignment:
| Q |
151 |
gaatacatcaacacttagaaccttcaatttatttctctttttgcaggtggtgtaacatcaatggtgccatttttggagaagttttttccagatgtataca |
250 |
Q |
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| T |
1347996 |
gaatacatcaacacttagaaccttcaatttatttctctttttgcaggtggtgtaacatcaatggtgccatttttggagaagttttttccagatgtataca |
1348095 |
T |
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| Q |
251 |
ccaagatgaaacaagacaacaagattagcaattactgcaaatttgatagccaactcctaacaacattcacatcatcgctatatatagctggccttctagc |
350 |
Q |
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| T |
1348096 |
ccaagatgaaacaagacaacaagattagcaattactgcaaatttgatagccaacttctaacaacattcacatcatcactatatatagctggccttttagc |
1348195 |
T |
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| Q |
351 |
atctttctttgcttcatcaatcacaagagtctttggtcgcaaaccatcaattcttgtaggtggtgctgcattccttattggagcagctcttggtggtgct |
450 |
Q |
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| T |
1348196 |
atctttctttgcatcatcaatcacaagagcctttggtcgcaaaccatcaattcttgtaggtggtgctgcattccttattggagcagctcttggtggtgct |
1348295 |
T |
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| Q |
451 |
gcacttaatatatacatgctaatacttggtcgtgttcttcttggagttggaattggctttgctaatcaggta---------tttctccaattacaatgtt |
541 |
Q |
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| T |
1348296 |
gcacttaatatatacatgctaatacttggtcgtgttcttcttggagttggaattggctttgctaatcaggtataatcaatctttctccaattacaatgtt |
1348395 |
T |
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| Q |
542 |
tttctaacttatttgatttacaagtcaatgataaaaaagagagataatggcactctttaggccacagatttagaaattttagtgatagtgacataaatat |
641 |
Q |
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| T |
1348396 |
tttcaaatttatttgatttacatgtcaatgatgaaaaagagagataatggcactttttaggccacatatttagaa-----------agtgacataaatat |
1348484 |
T |
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| Q |
642 |
gtaagttaatatatggctgcctt |
664 |
Q |
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| T |
1348485 |
gtaagttaatatatggttgcctt |
1348507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 1347867 - 1347926
Alignment:
| Q |
39 |
cacataggatagataaatcaaaacttgccaaaatggcagaggataaacaccatttaactc |
98 |
Q |
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| T |
1347867 |
cacataggatagataaatcaaaacttgcccaaatggcagaggataaacaccatttaactc |
1347926 |
T |
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