View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15558_low_4 (Length: 398)
Name: NF15558_low_4
Description: NF15558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15558_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 398
Target Start/End: Original strand, 14418638 - 14419027
Alignment:
| Q |
9 |
acatcatcatttccctaacttcaaaggagttcttgttcttgacaacgatgtcatacatgtgcatggacttgaacctgttgaaatccataggaagggagat |
108 |
Q |
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| T |
14418638 |
acatcatcatttccctaacttcaaaggagttcttgttcttgacaacgatgtcatacatgtgcatggacttgaacctgttgaaatccataggaagggagat |
14418737 |
T |
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| Q |
109 |
aagatgaacggttgagcgtttgtggaactggaggaggtcagggtcatcatagtaacgctcccaccccaatgaacttagcttgcgctctaaaacggcataa |
208 |
Q |
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| T |
14418738 |
aagatgaacggttgagcgtttgtggaactggaggaggtcagggtcatcatagtaacgctcccaccccaatgaacttagcttgcgctctaaaacggcataa |
14418837 |
T |
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| Q |
209 |
gaggtgataatctcgttgcttgcggtatgaaccaacacttttcgccgtccgcctgacccttggcggccaccctccatcgcctccgcgccatccactagcc |
308 |
Q |
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| T |
14418838 |
gaggtgataatctcgttgcttgcggtatgaaccaacaccttgcgccgtccgcctgacccttggcggccaccctccatcgcctccacgccatccactagcc |
14418937 |
T |
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| Q |
309 |
gcaccacgccgttcttgaaaacccaaaccccagacattattggaatagtatacaaatggagcaagaaagaagaaacaagaacaaggtgtt |
398 |
Q |
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| T |
14418938 |
gcaccacgccgttcttgaaaacccaaaccccagacattattggaatagtatacaaatggagcaagaaagaagaaacaagaacaaagtgtt |
14419027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 49633977 - 49633923
Alignment:
| Q |
36 |
agttcttgttcttgacaacgatgtcatacatgtgcatggacttgaacctgttgaa |
90 |
Q |
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| T |
49633977 |
agttcttgttcttgacgacaatgtcatacatgtgcatgggcttgagcttgttgaa |
49633923 |
T |
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