View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15558_low_5 (Length: 394)
Name: NF15558_low_5
Description: NF15558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15558_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 53425547 - 53425916
Alignment:
| Q |
9 |
atggacatcatcagcgtaaacatagaaataatgtataggatataacaggttggcttgactcgatttatgtgagagagaaattcaaatcaatcacatattg |
108 |
Q |
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|||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425547 |
atggacctcataagcgtaaacatagaaataatgtatgggatataacaggttggcttgactcgatttatgtgagagagaaattcaaatcaatcacatattg |
53425646 |
T |
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| Q |
109 |
attagcagggtttggttaaatttatgtaatattttgttacaaaatcataatcaattcagatcgatgaaaaacatcttattcacaacacacctgttacagt |
208 |
Q |
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| T |
53425647 |
attagcagggtttggttaaatttatttaatattttgttacaaaatcataatcaattcagatcgatgaaaaacatcttattcacaacacacctgttacagt |
53425746 |
T |
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| Q |
209 |
tggatgaattgaaatcttttgaggccatgcatgtgcctttccaaccgggtggaataggacccattcccttgtctgaaaaacttgctgcttcaggccatat |
308 |
Q |
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| T |
53425747 |
tggatgagttgaagtcttttgatgtcatgcagatgcctttccaactgggtggaataggacccattcccttgtctgaaaaacttgctgcttctggccatat |
53425846 |
T |
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| Q |
309 |
acctgaataactcattgttcatttaattaacttattgttaaaattatgaaacatgtatgtatgttatgta |
378 |
Q |
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| T |
53425847 |
acctgaataactcattgtttatttaattaacttattgttaaaattatgaaacatgtatgtatgttatgta |
53425916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 53434025 - 53434142
Alignment:
| Q |
197 |
acctgttacagttggatgaattgaaatcttttgaggccatgcatgtgcctttccaaccgggtggaataggacccattcccttgtctgaaaaacttgctgc |
296 |
Q |
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| T |
53434025 |
acctgttacagttggatgagttgaaatcttttgaggccatgcatgtgcctttccaaccgggtggaataggacccattcccttgtctgaaaaacttgctgc |
53434124 |
T |
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| Q |
297 |
ttcaggccatatacctga |
314 |
Q |
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||| |||||||||||||| |
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| T |
53434125 |
ttctggccatatacctga |
53434142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 318
Target Start/End: Complemental strand, 48371378 - 48371257
Alignment:
| Q |
197 |
acctgttacagttggatgaattgaaatcttttgaggccatgcatgtgcctttccaaccgggtggaataggacccattcccttgtctgaaaaacttgctgc |
296 |
Q |
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|||| ||||| || ||||| ||||| || ||||| | |||||| ||||||||||||||| |||||||||| ||||||| ||||| |||||||||| ||| |
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| T |
48371378 |
acctattacaattagatgagttgaagtcatttgatgtcatgcaaatgcctttccaaccggatggaataggatccattccattgtccgaaaaacttgttgc |
48371279 |
T |
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| Q |
297 |
ttcaggccatatacctgaataa |
318 |
Q |
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||| |||||||||||||||||| |
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| T |
48371278 |
ttctggccatatacctgaataa |
48371257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 53321486 - 53321559
Alignment:
| Q |
244 |
cctttccaaccgggtggaataggacccattcccttgtctgaaaaacttgctgcttcaggccatatacctgaata |
317 |
Q |
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| T |
53321486 |
cctttccaaccaggtggaataggatccattcccttgtctgaaaaactttgtgcttttggccatatacctgaata |
53321559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 26098735 - 26098802
Alignment:
| Q |
197 |
acctgttacagttggatgaattgaaatcttttgaggccatgcatgtgcctttccaaccgggtggaata |
264 |
Q |
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||||||||||||||||||| |||||||||||||| | |||||| || || |||||||||| ||||||| |
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| T |
26098735 |
acctgttacagttggatgagttgaaatcttttgatgtcatgcaggtaccattccaaccggttggaata |
26098802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 26098949 - 26099001
Alignment:
| Q |
262 |
ataggacccattcccttgtctgaaaaacttgctgcttcaggccatatacctga |
314 |
Q |
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|||||||||||| |||||||||||||||||| |||||| |||||||| ||||| |
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| T |
26098949 |
ataggacccatttccttgtctgaaaaacttggtgcttctggccatatccctga |
26099001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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