View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15558_low_9 (Length: 214)

Name: NF15558_low_9
Description: NF15558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15558_low_9
NF15558_low_9
[»] chr2 (2 HSPs)
chr2 (11-196)||(1354523-1354709)
chr2 (11-185)||(1361420-1361595)
[»] chr8 (1 HSPs)
chr8 (111-198)||(41190809-41190896)
[»] chr4 (1 HSPs)
chr4 (111-196)||(47073404-47073489)
[»] chr1 (1 HSPs)
chr1 (111-196)||(26970477-26970562)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 1354709 - 1354523
Alignment:
Q  11 tgagatgaatagttgtttgaaaaggaagccatttatgtgggccacatatgtcttgaatttcgaaatttgttttgatttgatccttaggtcgat-nnnnnn 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  1354709 tgagatgaatagttgtttgaaaaggaagccatttatgtgggccacatatgtcttgaatttcgaaatttgttttgatttgatccttaggtcgatcaaaaaa 1354610  T
Q  110 ncatatgttccaagctggtgttatgctgtaatgaacagaagctatgtttaggcttttagctattggtgctaaccaaacagtaccata 196  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1354609 acatatgttccaagctggtgttatgctgtaatgaacagaagctatgtttaggcttttagctattggtgctaaccaaacagtaccata 1354523  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 1361595 - 1361420
Alignment:
Q  11 tgagatgaatagttgtttgaaaaggaagccatttatgtgggccacatatgtcttgaatttcgaaatttgttttgatttgatccttaggtcgatnnnnnnn 110  Q
    |||||||||| |||||||||||||||| ||||||  |||||||||| ||||||| || || |||||||||||||| ||||||||| ||| |||           
T  1361595 tgagatgaatggttgtttgaaaaggaacccattttggtgggccacacatgtcttcaagtttgaaatttgttttgacttgatcctttggtggatcaaagaa 1361496  T
Q  111 -catatgttccaagctggtgttatgctgtaatgaacagaagctatgtttaggcttttagctattggtgctaaccaa 185  Q
     ||| |||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||| ||||||    
T  1361495 acatttgttccaagctggtgttatgttgtaatgagcagcagctatgttgaggcttttagctattggtgccaaccaa 1361420  T

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Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 41190896 - 41190809
Alignment:
Q  111 catatgttccaagctggtgttatgctgtaatgaacagaagctatgtttaggcttttagctattggtgctaaccaaacagtaccatatg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41190896 catatgttccaagctggtgttatgctgtaatgaacagaagctatgttgaggcttttagctattggtgctaaccaaacagtaccatatg 41190809  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 47073489 - 47073404
Alignment:
Q  111 catatgttccaagctggtgttatgctgtaatgaacagaagctatgtttaggcttttagctattggtgctaaccaaacagtaccata 196  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47073489 catatgttgcaagctggtgttatgctgtaatgaacagaagctatgttgaggcttttagctattggtgctaaccaaacagtaccata 47073404  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 26970477 - 26970562
Alignment:
Q  111 catatgttccaagctggtgttatgctgtaatgaacagaagctatgtttaggcttttagctattggtgctaaccaaacagtaccata 196  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26970477 catatgttgcaagctggtgttatgctgtaatgaacagaagctatgttgaggcttttagctattggtgctaaccaaacagtaccata 26970562  T

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