View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15559_high_1 (Length: 557)
Name: NF15559_high_1
Description: NF15559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15559_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 30 - 557
Target Start/End: Original strand, 47116595 - 47117118
Alignment:
| Q |
30 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
129 |
Q |
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| T |
47116595 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
47116694 |
T |
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| Q |
130 |
aaaatttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatac |
229 |
Q |
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| T |
47116695 |
aaaagttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatac |
47116794 |
T |
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| Q |
230 |
ccttgttatttcatttccttatgatatctcnnnnnnnctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatat |
329 |
Q |
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| T |
47116795 |
ccttgttatttcatttccttatgatatctctttttttctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatat |
47116894 |
T |
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| Q |
330 |
tcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaac |
429 |
Q |
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| T |
47116895 |
tcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaac |
47116994 |
T |
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| Q |
430 |
gtatcaatgactcgatcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacg |
529 |
Q |
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| T |
47116995 |
gtatcaatgac----tcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacg |
47117090 |
T |
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| Q |
530 |
ggaacgccaacatcaccatcttcgccgg |
557 |
Q |
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| T |
47117091 |
ggaacgccaacatcaccgtcttcaccgg |
47117118 |
T |
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